Atauschii AET6Gv20560400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20560400 [ AET6Gv20560400] |
6D | 292858081 | 292858915 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20560400.1 AET6Gv20560400.1 |
High | No | 725 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -35.862 AMFE: -0.726 GC content %: 49.379 | |
| Atauschii_AET6Gv20560400.2 AET6Gv20560400.2 |
High | No | 600 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -38.217 AMFE: -0.749 GC content %: 51.000 | |
| Atauschii_AET6Gv20560400.3 AET6Gv20560400.3 |
High | No | 606 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -37.954 AMFE: -0.744 GC content %: 50.990 | |
| Atauschii_AET6Gv20560400.4 AET6Gv20560400.4 |
High | No | 642 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -37.850 AMFE: -0.732 GC content %: 51.713 | |
| Atauschii_AET6Gv20560400.5 AET6Gv20560400.5 |
High | No | 548 | OG0000702 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -40.255 AMFE: -0.740 GC content %: 54.380 | |
| Atauschii_AET6Gv20560400.6 AET6Gv20560400.6 |
High | No | 267 | OG0000210 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -34.906 AMFE: -0.630 GC content %: 55.431 | |
| Atauschii_AET6Gv20560400.7 AET6Gv20560400.7 |
High | No | 249 | OG0000210 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -39.076 AMFE: -0.671 GC content %: 58.233 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
