Atauschii AET6Gv20566100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20566100 [ AET6Gv20566100] |
6D | 297054898 | 297058350 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20566100.1 AET6Gv20566100.1 |
Low | No | 1837 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -30.425 AMFE: -0.634 GC content %: 48.013 | |
| Atauschii_AET6Gv20566100.10 AET6Gv20566100.10 |
Low | No | 1663 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -28.743 AMFE: -0.618 GC content %: 46.482 | |
| Atauschii_AET6Gv20566100.11 AET6Gv20566100.11 |
Low | No | 1563 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -32.783 AMFE: -0.632 GC content %: 51.887 | |
| Atauschii_AET6Gv20566100.12 AET6Gv20566100.12 |
Low | No | 1625 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -30.437 AMFE: -0.620 GC content %: 49.108 | |
| Atauschii_AET6Gv20566100.13 AET6Gv20566100.13 |
Low | No | 1463 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -32.153 AMFE: -0.644 GC content %: 49.897 | |
| Atauschii_AET6Gv20566100.14 AET6Gv20566100.14 |
Low | No | 1513 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -28.857 AMFE: -0.645 GC content %: 44.746 | |
| Atauschii_AET6Gv20566100.15 AET6Gv20566100.15 |
Low | No | 1352 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -32.596 AMFE: -0.609 GC content %: 53.550 | |
| Atauschii_AET6Gv20566100.16 AET6Gv20566100.16 |
Low | No | 1649 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -30.188 AMFE: -0.616 GC content %: 48.999 | |
| Atauschii_AET6Gv20566100.17 AET6Gv20566100.17 |
Low | No | 1873 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -30.998 AMFE: -0.619 GC content %: 50.080 | |
| Atauschii_AET6Gv20566100.18 AET6Gv20566100.18 |
Low | No | 1493 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -33.851 AMFE: -0.634 GC content %: 53.382 | |
| Atauschii_AET6Gv20566100.19 AET6Gv20566100.19 |
Low | No | 1885 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -31.151 AMFE: -0.624 GC content %: 49.920 | |
| Atauschii_AET6Gv20566100.2 AET6Gv20566100.2 |
High | No | 1128 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -28.041 AMFE: -0.648 GC content %: 43.262 | |
| Atauschii_AET6Gv20566100.20 AET6Gv20566100.20 |
Low | No | 1488 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -28.280 AMFE: -0.595 GC content %: 47.513 | |
| Atauschii_AET6Gv20566100.21 AET6Gv20566100.21 |
Low | No | 1316 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -28.571 AMFE: -0.591 GC content %: 48.328 | |
| Atauschii_AET6Gv20566100.22 AET6Gv20566100.22 |
Low | No | 1489 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -31.504 AMFE: -0.622 GC content %: 50.638 | |
| Atauschii_AET6Gv20566100.23 AET6Gv20566100.23 |
Low | No | 1282 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -24.251 AMFE: -0.606 GC content %: 40.016 | |
| Atauschii_AET6Gv20566100.24 AET6Gv20566100.24 |
High | No | 1151 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -34.144 AMFE: -0.608 GC content %: 56.125 | |
| Atauschii_AET6Gv20566100.3 AET6Gv20566100.3 |
Low | No | 1970 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -29.736 AMFE: -0.613 GC content %: 48.477 | |
| Atauschii_AET6Gv20566100.4 AET6Gv20566100.4 |
Low | No | 1710 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -29.444 AMFE: -0.596 GC content %: 49.415 | |
| Atauschii_AET6Gv20566100.5 AET6Gv20566100.5 |
Low | No | 1440 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -32.340 AMFE: -0.614 GC content %: 52.639 | |
| Atauschii_AET6Gv20566100.6 AET6Gv20566100.6 |
Low | No | 1903 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -29.700 AMFE: -0.606 GC content %: 49.028 | |
| Atauschii_AET6Gv20566100.7 AET6Gv20566100.7 |
Low | No | 1604 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -26.739 AMFE: -0.648 GC content %: 41.272 | |
| Atauschii_AET6Gv20566100.8 AET6Gv20566100.8 |
Low | No | 977 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -30.051 AMFE: -0.650 GC content %: 46.264 | |
| Atauschii_AET6Gv20566100.9 AET6Gv20566100.9 |
Low | No | 1735 | OG0000327 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -30.207 AMFE: -0.604 GC content %: 49.971 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20566100.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.19 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20566100.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
