Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20592900 [ AET6Gv20592900] |
6D | 315492933 | 315499149 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20592900.1 AET6Gv20592900.1 |
High | No | 453 | OG0016645 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -29.757 AMFE: -0.488 GC content %: 60.927 | |
Atauschii_AET6Gv20592900.2 AET6Gv20592900.2 |
Low | No | 450 | OG0016645 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -28.689 AMFE: -0.527 GC content %: 54.444 | |
Atauschii_AET6Gv20592900.3 AET6Gv20592900.3 |
Low | No | 297 | OG0010151 | Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -26.869 AMFE: -0.525 GC content %: 51.178 | |
Atauschii_AET6Gv20592900.4 AET6Gv20592900.4 |
Low | No | 307 | OG0078961 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -26.352 AMFE: -0.525 GC content %: 50.163 | |
Atauschii_AET6Gv20592900.5 AET6Gv20592900.5 |
Low | No | 275 | OG0078962 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -28.727 AMFE: -0.552 GC content %: 52.000 | |
Atauschii_AET6Gv20592900.6 AET6Gv20592900.6 |
High | No | 824 | OG0078963 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -24.515 AMFE: -0.667 GC content %: 36.772 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20592900.2 | SwissProt | 2021-04-01 | Q9CQN7 | 1.01e-6 |
Atauschii_AET6Gv20592900.3 | SwissProt | 2021-04-01 | Q6DJI4 | 2.25e-7 |
Atauschii_AET6Gv20592900.4 | SwissProt | 2021-04-01 | Q6DJI4 | 2.32e-7 |
Atauschii_AET6Gv20592900.5 | SwissProt | 2021-04-01 | Q6DJI4 | 1.22e-8 |