GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20636900 [ AET6Gv20636900]	6D	341321617	341325105	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20636900.5 AET6Gv20636900.5	High	No	510	OG0016649		Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -27.039 AMFE: -0.673 GC content %: 40.196
Atauschii_AET6Gv20636900.6 AET6Gv20636900.6	High	No	541	OG0016649		Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -26.026 AMFE: -0.664 GC content %: 39.187
Atauschii_AET6Gv20636900.7 AET6Gv20636900.7	High	No	720	OG0016649		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -26.625 AMFE: -0.677 GC content %: 39.306

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).