GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20645500 [ AET6Gv20645500]	6D	347519503	347525717	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20645500.15 AET6Gv20645500.15	High	No	578	OG0000193		Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -31.228 AMFE: -0.652 GC content %: 47.924
Atauschii_AET6Gv20645500.16 AET6Gv20645500.16	High	No	579	OG0000193		Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -31.105 AMFE: -0.648 GC content %: 48.014
Atauschii_AET6Gv20645500.17 AET6Gv20645500.17	High	No	893	OG0000193		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -28.757 AMFE: -0.639 GC content %: 45.017
Atauschii_AET6Gv20645500.2 AET6Gv20645500.2	High	No	1779	OG0000193		Get ORF Coding potential... Type: noncoding Potential: -0.371 Folding energies... MFEI: -31.675 AMFE: -0.606 GC content %: 52.277
Atauschii_AET6Gv20645500.6 AET6Gv20645500.6	High	No	1219	OG0000193		Get ORF Coding potential... Type: noncoding Potential: -0.412 Folding energies... MFEI: -34.266 AMFE: -0.604 GC content %: 56.686

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).