Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20716300 [ AET6Gv20716300] |
6D | 396573829 | 396577582 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20716300.4 AET6Gv20716300.4 |
High | No | 369 | OG0079176 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -41.382 AMFE: -0.621 GC content %: 66.667 | |
Atauschii_AET6Gv20716300.5 AET6Gv20716300.5 |
Low | No | 252 | OG0004819 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -30.595 AMFE: -0.571 GC content %: 53.571 | |
Atauschii_AET6Gv20716300.7 AET6Gv20716300.7 |
High | No | 824 | OG0016659 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -29.260 AMFE: -0.653 GC content %: 44.782 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20716300.5 | SwissProt | 2021-04-01 | Q5TC12 | 2.96e-4 |