Atauschii AET6Gv20738300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20738300 [ AET6Gv20738300] |
6D | 408054911 | 408059207 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20738300.1 AET6Gv20738300.1 |
Low | No | 2683 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.055 Folding energies... MFEI: -27.313 AMFE: -0.639 GC content %: 42.713 | |
| Atauschii_AET6Gv20738300.10 AET6Gv20738300.10 |
Low | No | 3178 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.076 Folding energies... MFEI: -29.619 AMFE: -0.661 GC content %: 44.840 | |
| Atauschii_AET6Gv20738300.11 AET6Gv20738300.11 |
Low | No | 2869 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.112 Folding energies... MFEI: -30.021 AMFE: -0.658 GC content %: 45.591 | |
| Atauschii_AET6Gv20738300.12 AET6Gv20738300.12 |
Low | No | 2427 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -31.145 AMFE: -0.656 GC content %: 47.507 | |
| Atauschii_AET6Gv20738300.13 AET6Gv20738300.13 |
Low | No | 2824 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.086 Folding energies... MFEI: -30.138 AMFE: -0.661 GC content %: 45.574 | |
| Atauschii_AET6Gv20738300.14 AET6Gv20738300.14 |
Low | No | 2789 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.108 Folding energies... MFEI: -29.975 AMFE: -0.652 GC content %: 46.002 | |
| Atauschii_AET6Gv20738300.15 AET6Gv20738300.15 |
Low | No | 2110 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -31.839 AMFE: -0.646 GC content %: 49.289 | |
| Atauschii_AET6Gv20738300.16 AET6Gv20738300.16 |
Low | No | 2808 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -30.110 AMFE: -0.660 GC content %: 45.655 | |
| Atauschii_AET6Gv20738300.17 AET6Gv20738300.17 |
Low | No | 2848 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -29.888 AMFE: -0.653 GC content %: 45.787 | |
| Atauschii_AET6Gv20738300.19 AET6Gv20738300.19 |
Low | No | 2828 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.176 Folding energies... MFEI: -30.004 AMFE: -0.657 GC content %: 45.686 | |
| Atauschii_AET6Gv20738300.2 AET6Gv20738300.2 |
Low | No | 1933 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.130 Folding energies... MFEI: -28.355 AMFE: -0.625 GC content %: 45.370 | |
| Atauschii_AET6Gv20738300.21 AET6Gv20738300.21 |
Low | No | 2646 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.075 Folding energies... MFEI: -28.277 AMFE: -0.644 GC content %: 43.878 | |
| Atauschii_AET6Gv20738300.23 AET6Gv20738300.23 |
Low | No | 2653 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -28.349 AMFE: -0.652 GC content %: 43.498 | |
| Atauschii_AET6Gv20738300.24 AET6Gv20738300.24 |
Low | No | 2144 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -31.735 AMFE: -0.642 GC content %: 49.394 | |
| Atauschii_AET6Gv20738300.25 AET6Gv20738300.25 |
Low | No | 2912 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -29.962 AMFE: -0.652 GC content %: 45.948 | |
| Atauschii_AET6Gv20738300.26 AET6Gv20738300.26 |
Low | No | 2911 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.114 Folding energies... MFEI: -30.134 AMFE: -0.656 GC content %: 45.964 | |
| Atauschii_AET6Gv20738300.27 AET6Gv20738300.27 |
Low | No | 2759 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.166 Folding energies... MFEI: -30.199 AMFE: -0.653 GC content %: 46.212 | |
| Atauschii_AET6Gv20738300.28 AET6Gv20738300.28 |
Low | No | 2767 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.174 Folding energies... MFEI: -30.195 AMFE: -0.652 GC content %: 46.296 | |
| Atauschii_AET6Gv20738300.29 AET6Gv20738300.29 |
Low | No | 2785 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.061 Folding energies... MFEI: -29.975 AMFE: -0.650 GC content %: 46.104 | |
| Atauschii_AET6Gv20738300.3 AET6Gv20738300.3 |
Low | No | 2132 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.120 Folding energies... MFEI: -28.349 AMFE: -0.633 GC content %: 44.794 | |
| Atauschii_AET6Gv20738300.30 AET6Gv20738300.30 |
Low | No | 2747 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -30.149 AMFE: -0.652 GC content %: 46.269 | |
| Atauschii_AET6Gv20738300.31 AET6Gv20738300.31 |
Low | No | 2350 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -31.221 AMFE: -0.644 GC content %: 48.511 | |
| Atauschii_AET6Gv20738300.32 AET6Gv20738300.32 |
Low | No | 2198 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.117 Folding energies... MFEI: -32.011 AMFE: -0.647 GC content %: 49.454 | |
| Atauschii_AET6Gv20738300.33 AET6Gv20738300.33 |
Low | No | 2689 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -30.599 AMFE: -0.658 GC content %: 46.523 | |
| Atauschii_AET6Gv20738300.34 AET6Gv20738300.34 |
Low | No | 2797 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.108 Folding energies... MFEI: -30.458 AMFE: -0.661 GC content %: 46.085 | |
| Atauschii_AET6Gv20738300.35 AET6Gv20738300.35 |
Low | No | 2600 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.117 Folding energies... MFEI: -28.527 AMFE: -0.648 GC content %: 44.000 | |
| Atauschii_AET6Gv20738300.37 AET6Gv20738300.37 |
High | No | 1168 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -29.991 AMFE: -0.639 GC content %: 46.918 | |
| Atauschii_AET6Gv20738300.39 AET6Gv20738300.39 |
Low | No | 2056 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.190 Folding energies... MFEI: -32.607 AMFE: -0.651 GC content %: 50.097 | |
| Atauschii_AET6Gv20738300.4 AET6Gv20738300.4 |
Low | No | 1851 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -28.471 AMFE: -0.621 GC content %: 45.867 | |
| Atauschii_AET6Gv20738300.40 AET6Gv20738300.40 |
Low | No | 2886 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -30.055 AMFE: -0.651 GC content %: 46.188 | |
| Atauschii_AET6Gv20738300.41 AET6Gv20738300.41 |
Low | No | 2756 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -30.454 AMFE: -0.659 GC content %: 46.226 | |
| Atauschii_AET6Gv20738300.42 AET6Gv20738300.42 |
Low | No | 2242 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.120 Folding energies... MFEI: -31.650 AMFE: -0.646 GC content %: 49.019 | |
| Atauschii_AET6Gv20738300.43 AET6Gv20738300.43 |
Low | No | 2779 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -30.284 AMFE: -0.654 GC content %: 46.312 | |
| Atauschii_AET6Gv20738300.45 AET6Gv20738300.45 |
Low | No | 2832 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -30.339 AMFE: -0.656 GC content %: 46.257 | |
| Atauschii_AET6Gv20738300.47 AET6Gv20738300.47 |
Low | No | 2804 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -30.350 AMFE: -0.656 GC content %: 46.255 | |
| Atauschii_AET6Gv20738300.48 AET6Gv20738300.48 |
Low | No | 2674 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -30.748 AMFE: -0.659 GC content %: 46.672 | |
| Atauschii_AET6Gv20738300.49 AET6Gv20738300.49 |
Low | No | 2170 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.122 Folding energies... MFEI: -32.018 AMFE: -0.648 GC content %: 49.447 | |
| Atauschii_AET6Gv20738300.50 AET6Gv20738300.50 |
Low | No | 2338 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -31.895 AMFE: -0.658 GC content %: 48.460 | |
| Atauschii_AET6Gv20738300.51 AET6Gv20738300.51 |
Low | No | 2852 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -30.158 AMFE: -0.656 GC content %: 46.003 | |
| Atauschii_AET6Gv20738300.52 AET6Gv20738300.52 |
Low | No | 2122 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.195 Folding energies... MFEI: -32.163 AMFE: -0.648 GC content %: 49.623 | |
| Atauschii_AET6Gv20738300.53 AET6Gv20738300.53 |
Low | No | 2875 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -30.442 AMFE: -0.656 GC content %: 46.435 | |
| Atauschii_AET6Gv20738300.54 AET6Gv20738300.54 |
Low | No | 2149 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -32.271 AMFE: -0.651 GC content %: 49.558 | |
| Atauschii_AET6Gv20738300.55 AET6Gv20738300.55 |
Low | No | 1964 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.019 Folding energies... MFEI: -32.811 AMFE: -0.644 GC content %: 50.916 | |
| Atauschii_AET6Gv20738300.56 AET6Gv20738300.56 |
Low | No | 1152 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -25.885 AMFE: -0.600 GC content %: 43.142 | |
| Atauschii_AET6Gv20738300.57 AET6Gv20738300.57 |
Low | No | 1230 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.011 Folding energies... MFEI: -25.528 AMFE: -0.599 GC content %: 42.602 | |
| Atauschii_AET6Gv20738300.59 AET6Gv20738300.59 |
Low | No | 1513 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -24.884 AMFE: -0.605 GC content %: 41.110 | |
| Atauschii_AET6Gv20738300.6 AET6Gv20738300.6 |
High | No | 760 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -24.276 AMFE: -0.619 GC content %: 39.211 | |
| Atauschii_AET6Gv20738300.61 AET6Gv20738300.61 |
Low | No | 1407 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.024 Folding energies... MFEI: -25.153 AMFE: -0.613 GC content %: 41.009 | |
| Atauschii_AET6Gv20738300.62 AET6Gv20738300.62 |
Low | No | 572 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.141 Folding energies... MFEI: -22.448 AMFE: -0.546 GC content %: 41.084 | |
| Atauschii_AET6Gv20738300.63 AET6Gv20738300.63 |
High | No | 467 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -45.996 AMFE: -0.684 GC content %: 67.238 | |
| Atauschii_AET6Gv20738300.7 AET6Gv20738300.7 |
Low | No | 2347 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -27.009 AMFE: -0.639 GC content %: 42.267 | |
| Atauschii_AET6Gv20738300.8 AET6Gv20738300.8 |
Low | No | 2424 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -30.986 AMFE: -0.646 GC content %: 47.937 | |
| Atauschii_AET6Gv20738300.9 AET6Gv20738300.9 |
Low | No | 2726 | OG0000031 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -30.169 AMFE: -0.657 GC content %: 45.928 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20738300.4 | SwissProt | 2021-04-01 | C0LGH8 | 1.96e-51 |
| Atauschii_AET6Gv20738300.57 | SwissProt | 2021-04-01 | C0LGH8 | 5.99e-54 |
| Atauschii_AET6Gv20738300.21 | SwissProt | 2021-04-01 | C0LGH8 | 1.22e-53 |
| Atauschii_AET6Gv20738300.52 | SwissProt | 2021-04-01 | C0LGH8 | 3.12e-13 |
| Atauschii_AET6Gv20738300.15 | SwissProt | 2021-04-01 | C0LGH8 | 2.02e-43 |
| Atauschii_AET6Gv20738300.32 | SwissProt | 2021-04-01 | C0LGH8 | 2.41e-51 |
| Atauschii_AET6Gv20738300.47 | SwissProt | 2021-04-01 | C0LGH8 | 4.9e-13 |
| Atauschii_AET6Gv20738300.9 | SwissProt | 2021-04-01 | C0LGH8 | 4.7e-13 |
| Atauschii_AET6Gv20738300.10 | SwissProt | 2021-04-01 | C0LGH8 | 1.5e-53 |
| Atauschii_AET6Gv20738300.28 | SwissProt | 2021-04-01 | C0LGH8 | 4.8e-13 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
