Atauschii AET6Gv20762200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20762200 [ AET6Gv20762200] |
6D | 420267350 | 420270722 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20762200.1 AET6Gv20762200.1 |
Low | No | 1090 | OG0010162 | Get ORF Coding potential... Type: noncoding Potential: -0.483 Folding energies... MFEI: -27.835 AMFE: -0.696 GC content %: 40.000 | |
| Atauschii_AET6Gv20762200.10 AET6Gv20762200.10 |
Low | No | 749 | OG0010162 | Get ORF Coding potential... Type: noncoding Potential: -0.012 Folding energies... MFEI: -38.158 AMFE: -0.684 GC content %: 55.808 | |
| Atauschii_AET6Gv20762200.11 AET6Gv20762200.11 |
High | No | 765 | OG0079278 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -39.634 AMFE: -0.640 GC content %: 61.961 | |
| Atauschii_AET6Gv20762200.3 AET6Gv20762200.3 |
Low | No | 676 | OG0010162 | Get ORF Coding potential... Type: noncoding Potential: -0.087 Folding energies... MFEI: -33.565 AMFE: -0.675 GC content %: 49.704 | |
| Atauschii_AET6Gv20762200.5 AET6Gv20762200.5 |
Low | No | 637 | OG0010162 | Get ORF Coding potential... Type: noncoding Potential: -0.028 Folding energies... MFEI: -31.915 AMFE: -0.662 GC content %: 48.195 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20762200.5 | SwissProt | 2021-04-01 | Q8LBA0 | 1.5e-36 |
| Atauschii_AET6Gv20762200.1 | SwissProt | 2021-04-01 | Q8LBA0 | 5.95e-11 |
| Atauschii_AET6Gv20762200.10 | SwissProt | 2021-04-01 | Q8LBA0 | 1.28e-13 |
| Atauschii_AET6Gv20762200.3 | SwissProt | 2021-04-01 | Q8LBA0 | 1.78e-36 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
