GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20764800 [ AET6Gv20764800]	6D	421499029	421499294	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20764800.1 AET6Gv20764800.1	Low	No	215	OG0079285		Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -21.767 AMFE: -0.520 GC content %: 41.860
Atauschii_AET6Gv20764800.2 AET6Gv20764800.2	Low	No	213	OG0079286		Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -19.437 AMFE: -0.517 GC content %: 37.559

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET6Gv20764800.2	SwissProt	2021-04-01	P0C2F6	2.93e-6
Atauschii_AET6Gv20764800.1	RepBase (RepeatMasker)	2014-01-31	LINE/L1
Atauschii_AET6Gv20764800.2	RepBase (RepeatMasker)	2014-01-31	LINE/L1
Atauschii_AET6Gv20764800.1	SwissProt	2021-04-01	P0C2F6	3.2e-7

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).