GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20767800 [ AET6Gv20767800]	6D	424188783	424190238	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20767800.1 AET6Gv20767800.1	High	No	781	OG0026001		Get ORF Coding potential... Type: noncoding Potential: -0.585 Folding energies... MFEI: -36.184 AMFE: -0.596 GC content %: 60.691
Atauschii_AET6Gv20767800.2 AET6Gv20767800.2	High	No	763	OG0026001		Get ORF Coding potential... Type: noncoding Potential: -0.570 Folding energies... MFEI: -36.763 AMFE: -0.599 GC content %: 61.337
Atauschii_AET6Gv20767800.5 AET6Gv20767800.5	High	No	240	OG0079289		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -18.542 AMFE: -0.536 GC content %: 34.583

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).