GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20768800 [ AET6Gv20768800]	6D	424453586	424454960	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20768800.1 AET6Gv20768800.1	High	No	882	OG0001928		Get ORF Coding potential... Type: noncoding Potential: -0.351 Folding energies... MFEI: -34.626 AMFE: -0.634 GC content %: 54.649
Atauschii_AET6Gv20768800.2 AET6Gv20768800.2	High	No	255	OG0001928		Get ORF Coding potential... Type: noncoding Potential: -0.187 Folding energies... MFEI: -24.275 AMFE: -0.430 GC content %: 56.471
Atauschii_AET6Gv20768800.3 AET6Gv20768800.3	High	No	271	OG0001928		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -23.321 AMFE: -0.419 GC content %: 55.720

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).