GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20773300 [ AET6Gv20773300]	6D	427179694	427180648	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20773300.2 AET6Gv20773300.2	High	No	241	OG0079299		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -33.763 AMFE: -0.528 GC content %: 63.900
Atauschii_AET6Gv20773300.4 AET6Gv20773300.4	High	No	595	OG0079300		Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -43.748 AMFE: -0.737 GC content %: 59.328

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).