Atauschii AET6Gv20781400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20781400 [ AET6Gv20781400] |
6D | 430496703 | 430499330 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20781400.10 AET6Gv20781400.10 |
Low | No | 1674 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -31.517 AMFE: -0.681 GC content %: 46.296 | |
| Atauschii_AET6Gv20781400.13 AET6Gv20781400.13 |
High | No | 2074 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -30.419 AMFE: -0.675 GC content %: 45.034 | |
| Atauschii_AET6Gv20781400.15 AET6Gv20781400.15 |
Low | No | 1960 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -26.643 AMFE: -0.669 GC content %: 39.796 | |
| Atauschii_AET6Gv20781400.16 AET6Gv20781400.16 |
Low | No | 1789 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -30.911 AMFE: -0.675 GC content %: 45.780 | |
| Atauschii_AET6Gv20781400.19 AET6Gv20781400.19 |
Low | No | 1370 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -29.314 AMFE: -0.650 GC content %: 45.109 | |
| Atauschii_AET6Gv20781400.2 AET6Gv20781400.2 |
High | No | 1641 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -30.932 AMFE: -0.670 GC content %: 46.191 | |
| Atauschii_AET6Gv20781400.23 AET6Gv20781400.23 |
Low | No | 912 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -0.529 Folding energies... MFEI: -32.917 AMFE: -0.657 GC content %: 50.110 | |
| Atauschii_AET6Gv20781400.25 AET6Gv20781400.25 |
Low | No | 1578 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -31.261 AMFE: -0.672 GC content %: 46.515 | |
| Atauschii_AET6Gv20781400.27 AET6Gv20781400.27 |
Low | No | 1482 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -31.424 AMFE: -0.671 GC content %: 46.829 | |
| Atauschii_AET6Gv20781400.28 AET6Gv20781400.28 |
Low | No | 1550 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -30.555 AMFE: -0.661 GC content %: 46.194 | |
| Atauschii_AET6Gv20781400.3 AET6Gv20781400.3 |
Low | No | 1482 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -29.683 AMFE: -0.658 GC content %: 45.142 | |
| Atauschii_AET6Gv20781400.30 AET6Gv20781400.30 |
Low | No | 1082 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -30.240 AMFE: -0.656 GC content %: 46.118 | |
| Atauschii_AET6Gv20781400.5 AET6Gv20781400.5 |
Low | No | 1752 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -26.490 AMFE: -0.656 GC content %: 40.411 | |
| Atauschii_AET6Gv20781400.8 AET6Gv20781400.8 |
Low | No | 1550 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -29.858 AMFE: -0.669 GC content %: 44.645 | |
| Atauschii_AET6Gv20781400.9 AET6Gv20781400.9 |
Low | No | 2258 | OG0000883 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -29.708 AMFE: -0.667 GC content %: 44.508 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20781400.8 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Atauschii_AET6Gv20781400.19 | SwissProt | 2021-04-01 | Q9LRZ3 | 1.48e-10 |
| Atauschii_AET6Gv20781400.16 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Atauschii_AET6Gv20781400.30 | SwissProt | 2021-04-01 | Q9LRZ3 | 1.67e-5 |
| Atauschii_AET6Gv20781400.9 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Atauschii_AET6Gv20781400.23 | SwissProt | 2021-04-01 | Q9LRZ3 | 5.38e-8 |
| Atauschii_AET6Gv20781400.25 | RepBase (RepeatMasker) | 2014-01-31 | Unknown | |
| Atauschii_AET6Gv20781400.8 | SwissProt | 2021-04-01 | Q9LRZ3 | 3.2e-5 |
| Atauschii_AET6Gv20781400.25 | SwissProt | 2021-04-01 | Q9LRZ3 | 8.25e-10 |
| Atauschii_AET6Gv20781400.3 | RepBase (RepeatMasker) | 2014-01-31 | Unknown |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
