Atauschii AET6Gv20781900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20781900 [ AET6Gv20781900] |
6D | 430582795 | 430587240 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20781900.1 AET6Gv20781900.1 |
High | No | 1766 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -25.453 AMFE: -0.703 GC content %: 36.183 | |
| Atauschii_AET6Gv20781900.13 AET6Gv20781900.13 |
Low | Yes | 2940 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -26.585 AMFE: -0.717 GC content %: 37.075 | |
| Atauschii_AET6Gv20781900.14 AET6Gv20781900.14 |
Low | Yes | 1796 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.247 AMFE: -0.727 GC content %: 36.080 | |
| Atauschii_AET6Gv20781900.15 AET6Gv20781900.15 |
High | No | 2048 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -30.078 AMFE: -0.662 GC content %: 45.410 | |
| Atauschii_AET6Gv20781900.19 AET6Gv20781900.19 |
High | No | 2314 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.742 AMFE: -0.677 GC content %: 42.481 | |
| Atauschii_AET6Gv20781900.2 AET6Gv20781900.2 |
High | No | 583 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -26.003 AMFE: -0.674 GC content %: 38.593 | |
| Atauschii_AET6Gv20781900.20 AET6Gv20781900.20 |
High | No | 992 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -27.732 AMFE: -0.634 GC content %: 43.750 | |
| Atauschii_AET6Gv20781900.21 AET6Gv20781900.21 |
High | No | 1618 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -30.111 AMFE: -0.637 GC content %: 47.281 | |
| Atauschii_AET6Gv20781900.22 AET6Gv20781900.22 |
High | No | 1446 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -27.566 AMFE: -0.671 GC content %: 41.079 | |
| Atauschii_AET6Gv20781900.23 AET6Gv20781900.23 |
High | No | 915 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -32.197 AMFE: -0.642 GC content %: 50.164 | |
| Atauschii_AET6Gv20781900.24 AET6Gv20781900.24 |
High | No | 492 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -33.455 AMFE: -0.529 GC content %: 63.211 | |
| Atauschii_AET6Gv20781900.25 AET6Gv20781900.25 |
High | No | 252 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -38.175 AMFE: -0.576 GC content %: 66.270 | |
| Atauschii_AET6Gv20781900.3 AET6Gv20781900.3 |
High | No | 2360 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -29.017 AMFE: -0.665 GC content %: 43.644 | |
| Atauschii_AET6Gv20781900.4 AET6Gv20781900.4 |
High | No | 1849 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -30.330 AMFE: -0.670 GC content %: 45.268 | |
| Atauschii_AET6Gv20781900.6 AET6Gv20781900.6 |
High | No | 1564 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -30.876 AMFE: -0.653 GC content %: 47.315 | |
| Atauschii_AET6Gv20781900.7 AET6Gv20781900.7 |
High | No | 2886 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -27.907 AMFE: -0.682 GC content %: 40.922 | |
| Atauschii_AET6Gv20781900.8 AET6Gv20781900.8 |
High | No | 2014 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -25.025 AMFE: -0.696 GC content %: 35.948 | |
| Atauschii_AET6Gv20781900.9 AET6Gv20781900.9 |
High | No | 2617 | OG0000622 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -28.464 AMFE: -0.685 GC content %: 41.536 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20781900.13 | Rfam | 14.6 | MIR1122 | 1.7e-8 |
| Atauschii_AET6Gv20781900.14 | Rfam | 14.6 | MIR1122 | 1.0e-8 |
| Atauschii_AET6Gv20781900.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET6Gv20781900.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
