Atauschii AET6Gv20790700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20790700 [ AET6Gv20790700] |
6D | 434213147 | 434216902 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20790700.1 AET6Gv20790700.1 |
Low | No | 1956 | OG0001006 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -30.097 AMFE: -0.626 GC content %: 48.057 | |
| Atauschii_AET6Gv20790700.2 AET6Gv20790700.2 |
Low | No | 1577 | OG0001006 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -31.059 AMFE: -0.620 GC content %: 50.095 | |
| Atauschii_AET6Gv20790700.3 AET6Gv20790700.3 |
Low | No | 2995 | OG0001006 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -31.275 AMFE: -0.647 GC content %: 48.347 | |
| Atauschii_AET6Gv20790700.6 AET6Gv20790700.6 |
Low | No | 2637 | OG0001006 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -29.924 AMFE: -0.654 GC content %: 45.734 | |
| Atauschii_AET6Gv20790700.7 AET6Gv20790700.7 |
Low | No | 1754 | OG0001006 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -29.219 AMFE: -0.617 GC content %: 47.320 | |
| Atauschii_AET6Gv20790700.8 AET6Gv20790700.8 |
High | No | 469 | OG0001006 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -26.930 AMFE: -0.571 GC content %: 47.122 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20790700.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET6Gv20790700.2 | SwissProt | 2021-04-01 | Q9SWG3 | 8.52e-6 |
| Atauschii_AET6Gv20790700.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET6Gv20790700.3 | SwissProt | 2021-04-01 | Q6NQJ7 | 6.14e-7 |
| Atauschii_AET6Gv20790700.7 | SwissProt | 2021-04-01 | Q6NQJ7 | 2.23e-7 |
| Atauschii_AET6Gv20790700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET6Gv20790700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET6Gv20790700.1 | SwissProt | 2021-04-01 | Q6NQJ7 | 6.57e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
