Atauschii AET6Gv20798100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20798100 [ AET6Gv20798100] |
6D | 437018212 | 437027754 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20798100.1 AET6Gv20798100.1 |
Low | No | 1209 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -26.733 AMFE: -0.636 GC content %: 42.018 | |
| Atauschii_AET6Gv20798100.12 AET6Gv20798100.12 |
Low | No | 836 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -25.335 AMFE: -0.630 GC content %: 40.191 | |
| Atauschii_AET6Gv20798100.13 AET6Gv20798100.13 |
Low | No | 922 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.705 AMFE: -0.634 GC content %: 40.564 | |
| Atauschii_AET6Gv20798100.29 AET6Gv20798100.29 |
Low | No | 1086 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -28.333 AMFE: -0.672 GC content %: 42.173 | |
| Atauschii_AET6Gv20798100.3 AET6Gv20798100.3 |
Low | No | 978 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -26.094 AMFE: -0.632 GC content %: 41.309 | |
| Atauschii_AET6Gv20798100.4 AET6Gv20798100.4 |
Low | No | 882 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -25.510 AMFE: -0.622 GC content %: 41.043 | |
| Atauschii_AET6Gv20798100.5 AET6Gv20798100.5 |
Low | No | 960 | OG0003799 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -25.240 AMFE: -0.612 GC content %: 41.250 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20798100.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.12 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.29 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20798100.29 | SwissProt | 2021-04-01 | Q80XC6 | 1.42e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
