Atauschii AET6Gv20803700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20803700 [ AET6Gv20803700] |
6D | 438644337 | 438651306 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20803700.1 AET6Gv20803700.1 |
High | No | 2915 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.631 AMFE: -0.663 GC content %: 43.190 | |
| Atauschii_AET6Gv20803700.10 AET6Gv20803700.10 |
High | No | 3258 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -28.999 AMFE: -0.665 GC content %: 43.585 | |
| Atauschii_AET6Gv20803700.11 AET6Gv20803700.11 |
High | No | 3329 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -28.862 AMFE: -0.663 GC content %: 43.527 | |
| Atauschii_AET6Gv20803700.12 AET6Gv20803700.12 |
Low | No | 3532 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -28.664 AMFE: -0.670 GC content %: 42.752 | |
| Atauschii_AET6Gv20803700.13 AET6Gv20803700.13 |
High | No | 3436 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.970 AMFE: -0.667 GC content %: 43.423 | |
| Atauschii_AET6Gv20803700.14 AET6Gv20803700.14 |
Low | No | 3512 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -28.599 AMFE: -0.666 GC content %: 42.938 | |
| Atauschii_AET6Gv20803700.15 AET6Gv20803700.15 |
Low | No | 3506 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -28.585 AMFE: -0.666 GC content %: 42.898 | |
| Atauschii_AET6Gv20803700.16 AET6Gv20803700.16 |
Low | No | 3402 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.715 AMFE: -0.664 GC content %: 43.269 | |
| Atauschii_AET6Gv20803700.17 AET6Gv20803700.17 |
High | No | 2249 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -30.751 AMFE: -0.655 GC content %: 46.954 | |
| Atauschii_AET6Gv20803700.18 AET6Gv20803700.18 |
High | No | 3180 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -29.079 AMFE: -0.665 GC content %: 43.711 | |
| Atauschii_AET6Gv20803700.19 AET6Gv20803700.19 |
High | No | 1025 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -31.883 AMFE: -0.635 GC content %: 50.244 | |
| Atauschii_AET6Gv20803700.2 AET6Gv20803700.2 |
High | No | 2488 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -28.416 AMFE: -0.669 GC content %: 42.484 | |
| Atauschii_AET6Gv20803700.3 AET6Gv20803700.3 |
High | No | 2132 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -28.415 AMFE: -0.661 GC content %: 43.011 | |
| Atauschii_AET6Gv20803700.4 AET6Gv20803700.4 |
High | No | 487 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -36.489 AMFE: -0.644 GC content %: 56.674 | |
| Atauschii_AET6Gv20803700.5 AET6Gv20803700.5 |
High | No | 774 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -32.894 AMFE: -0.626 GC content %: 52.584 | |
| Atauschii_AET6Gv20803700.6 AET6Gv20803700.6 |
Low | No | 1070 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -27.617 AMFE: -0.634 GC content %: 43.551 | |
| Atauschii_AET6Gv20803700.7 AET6Gv20803700.7 |
High | No | 3466 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -28.863 AMFE: -0.665 GC content %: 43.422 | |
| Atauschii_AET6Gv20803700.8 AET6Gv20803700.8 |
Low | No | 3575 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -28.688 AMFE: -0.665 GC content %: 43.161 | |
| Atauschii_AET6Gv20803700.9 AET6Gv20803700.9 |
Low | No | 3642 | OG0000567 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -28.465 AMFE: -0.668 GC content %: 42.641 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20803700.16 | SwissProt | 2021-04-01 | Q9SZL8 | 1.64e-4 |
| Atauschii_AET6Gv20803700.6 | SwissProt | 2021-04-01 | Q9SZL8 | 1.4e-5 |
| Atauschii_AET6Gv20803700.8 | SwissProt | 2021-04-01 | Q9SZL8 | 8.59e-5 |
| Atauschii_AET6Gv20803700.12 | SwissProt | 2021-04-01 | Q9SZL8 | 8.47e-5 |
| Atauschii_AET6Gv20803700.9 | SwissProt | 2021-04-01 | Q9SZL8 | 8.79e-5 |
| Atauschii_AET6Gv20803700.14 | SwissProt | 2021-04-01 | Q9SZL8 | 4.64e-5 |
| Atauschii_AET6Gv20803700.15 | SwissProt | 2021-04-01 | Q9SZL8 | 1.7e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
