Atauschii AET6Gv20820400

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Atauschii_AET6Gv20820400
[ AET6Gv20820400]
6D 445975698 445980812 v4 Aegilops tauschii (Ensembl Plants 51)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Atauschii_AET6Gv20820400.16
AET6Gv20820400.16
Low No 682 OG0026015
Coding potential...
Type: noncoding Potential: -0.674
Folding energies...
MFEI: -25.777 AMFE: -0.586
GC content
%: 43.988
Atauschii_AET6Gv20820400.17
AET6Gv20820400.17
Low No 1262 OG0026015
Coding potential...
Type: noncoding Potential: -1.440
Folding energies...
MFEI: -28.494 AMFE: -0.676
GC content
%: 42.155


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Atauschii_AET6Gv20820400.16  SwissProt 2021-04-01 Q6Z312 1.12e-11
Atauschii_AET6Gv20820400.17  SwissProt 2021-04-01 Q6Z312 9.36e-6


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Atauschii_AET6Gv20820400.png