Atauschii AET6Gv20827100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20827100 [ AET6Gv20827100] |
6D | 449251568 | 449258220 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20827100.12 AET6Gv20827100.12 |
High | No | 753 | OG0004824 | Get ORF Coding potential... Type: noncoding Potential: -1.361 Folding energies... MFEI: -27.317 AMFE: -0.517 GC content %: 52.855 | |
| Atauschii_AET6Gv20827100.13 AET6Gv20827100.13 |
High | No | 594 | OG0004824 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -27.407 AMFE: -0.495 GC content %: 55.387 | |
| Atauschii_AET6Gv20827100.14 AET6Gv20827100.14 |
High | No | 546 | OG0004824 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -24.048 AMFE: -0.425 GC content %: 56.593 | |
| Atauschii_AET6Gv20827100.7 AET6Gv20827100.7 |
High | No | 2655 | OG0004824 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -28.881 AMFE: -0.690 GC content %: 41.883 | |
| Atauschii_AET6Gv20827100.8 AET6Gv20827100.8 |
High | No | 2479 | OG0004824 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -28.899 AMFE: -0.684 GC content %: 42.235 | |
| Atauschii_AET6Gv20827100.9 AET6Gv20827100.9 |
High | No | 805 | OG0004824 | Get ORF Coding potential... Type: noncoding Potential: -1.352 Folding energies... MFEI: -27.938 AMFE: -0.546 GC content %: 51.180 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
