Atauschii AET6Gv20831700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20831700 [ AET6Gv20831700] |
6D | 450706632 | 450713900 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20831700.1 AET6Gv20831700.1 |
High | No | 395 | OG0079420 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -23.468 AMFE: -0.324 GC content %: 72.405 | |
| Atauschii_AET6Gv20831700.10 AET6Gv20831700.10 |
High | No | 1988 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -32.634 AMFE: -0.651 GC content %: 50.101 | |
| Atauschii_AET6Gv20831700.11 AET6Gv20831700.11 |
High | No | 2429 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -29.996 AMFE: -0.648 GC content %: 46.315 | |
| Atauschii_AET6Gv20831700.12 AET6Gv20831700.12 |
High | No | 2528 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -30.426 AMFE: -0.652 GC content %: 46.677 | |
| Atauschii_AET6Gv20831700.13 AET6Gv20831700.13 |
High | No | 2929 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -29.449 AMFE: -0.649 GC content %: 45.374 | |
| Atauschii_AET6Gv20831700.14 AET6Gv20831700.14 |
High | No | 492 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -32.785 AMFE: -0.462 GC content %: 70.935 | |
| Atauschii_AET6Gv20831700.15 AET6Gv20831700.15 |
High | No | 2073 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -31.606 AMFE: -0.646 GC content %: 48.963 | |
| Atauschii_AET6Gv20831700.16 AET6Gv20831700.16 |
High | No | 2912 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -29.419 AMFE: -0.648 GC content %: 45.433 | |
| Atauschii_AET6Gv20831700.17 AET6Gv20831700.17 |
High | No | 1027 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -35.385 AMFE: -0.613 GC content %: 57.741 | |
| Atauschii_AET6Gv20831700.18 AET6Gv20831700.18 |
High | No | 1596 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -34.292 AMFE: -0.642 GC content %: 53.446 | |
| Atauschii_AET6Gv20831700.19 AET6Gv20831700.19 |
High | No | 1428 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -27.892 AMFE: -0.634 GC content %: 43.978 | |
| Atauschii_AET6Gv20831700.2 AET6Gv20831700.2 |
High | No | 1188 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -35.724 AMFE: -0.605 GC content %: 59.091 | |
| Atauschii_AET6Gv20831700.20 AET6Gv20831700.20 |
High | No | 1037 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -26.403 AMFE: -0.632 GC content %: 41.755 | |
| Atauschii_AET6Gv20831700.3 AET6Gv20831700.3 |
High | No | 2123 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -31.474 AMFE: -0.631 GC content %: 49.882 | |
| Atauschii_AET6Gv20831700.4 AET6Gv20831700.4 |
High | No | 2069 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -31.590 AMFE: -0.618 GC content %: 51.136 | |
| Atauschii_AET6Gv20831700.5 AET6Gv20831700.5 |
High | No | 1974 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -31.317 AMFE: -0.636 GC content %: 49.240 | |
| Atauschii_AET6Gv20831700.6 AET6Gv20831700.6 |
High | No | 2150 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -31.343 AMFE: -0.633 GC content %: 49.488 | |
| Atauschii_AET6Gv20831700.7 AET6Gv20831700.7 |
High | No | 1833 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -31.948 AMFE: -0.635 GC content %: 50.300 | |
| Atauschii_AET6Gv20831700.8 AET6Gv20831700.8 |
High | No | 1901 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -31.657 AMFE: -0.646 GC content %: 48.974 | |
| Atauschii_AET6Gv20831700.9 AET6Gv20831700.9 |
High | No | 1779 | OG0000568 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -32.871 AMFE: -0.639 GC content %: 51.433 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
