Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20840100 [ AET6Gv20840100] |
6D | 453310551 | 453314604 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20840100.1 AET6Gv20840100.1 |
Low | No | 1008 | OG0010166 | Get ORF Coding potential... Type: noncoding Potential: -0.406 Folding energies... MFEI: -29.812 AMFE: -0.623 GC content %: 47.817 | |
Atauschii_AET6Gv20840100.2 AET6Gv20840100.2 |
Low | No | 2504 | OG0010166 | Get ORF Coding potential... Type: noncoding Potential: -0.095 Folding energies... MFEI: -27.963 AMFE: -0.582 GC content %: 48.043 | |
Atauschii_AET6Gv20840100.5 AET6Gv20840100.5 |
Low | No | 604 | OG0010166 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -31.705 AMFE: -0.542 GC content %: 58.444 | |
Atauschii_AET6Gv20840100.6 AET6Gv20840100.6 |
Low | No | 831 | OG0010166 | Get ORF Coding potential... Type: noncoding Potential: -0.201 Folding energies... MFEI: -29.952 AMFE: -0.621 GC content %: 48.255 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20840100.5 | SwissProt | 2021-04-01 | Q6H849 | 6.83e-8 |
Atauschii_AET6Gv20840100.6 | SwissProt | 2021-04-01 | Q6H849 | 1.75e-8 |
Atauschii_AET6Gv20840100.1 | SwissProt | 2021-04-01 | Q6H849 | 1.84e-7 |
Atauschii_AET6Gv20840100.2 | SwissProt | 2021-04-01 | Q6H849 | 8.58e-7 |