Atauschii AET6Gv20932900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20932900 [ AET6Gv20932900] |
6D | 476989994 | 476997085 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20932900.1 AET6Gv20932900.1 |
High | No | 4533 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -31.315 AMFE: -0.689 GC content %: 45.445 | |
| Atauschii_AET6Gv20932900.13 AET6Gv20932900.13 |
High | No | 4787 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -30.888 AMFE: -0.691 GC content %: 44.725 | |
| Atauschii_AET6Gv20932900.20 AET6Gv20932900.20 |
High | No | 1974 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -30.426 AMFE: -0.678 GC content %: 44.883 | |
| Atauschii_AET6Gv20932900.27 AET6Gv20932900.27 |
High | No | 1331 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -33.005 AMFE: -0.654 GC content %: 50.488 | |
| Atauschii_AET6Gv20932900.29 AET6Gv20932900.29 |
High | No | 821 | OG0009809 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -35.335 AMFE: -0.656 GC content %: 53.837 | |
| Atauschii_AET6Gv20932900.3 AET6Gv20932900.3 |
High | No | 2089 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -29.990 AMFE: -0.684 GC content %: 43.849 | |
| Atauschii_AET6Gv20932900.30 AET6Gv20932900.30 |
High | No | 296 | OG0079589 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -26.486 AMFE: -0.417 GC content %: 63.514 | |
| Atauschii_AET6Gv20932900.4 AET6Gv20932900.4 |
High | No | 2086 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -30.532 AMFE: -0.686 GC content %: 44.535 | |
| Atauschii_AET6Gv20932900.5 AET6Gv20932900.5 |
High | No | 2565 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -29.520 AMFE: -0.690 GC content %: 42.768 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
