Atauschii AET6Gv20944300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20944300 [ AET6Gv20944300] |
6D | 479896518 | 479900808 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20944300.1 AET6Gv20944300.1 |
Low | No | 1099 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -28.954 AMFE: -0.538 GC content %: 53.776 | |
| Atauschii_AET6Gv20944300.10 AET6Gv20944300.10 |
Low | No | 622 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.545 Folding energies... MFEI: -22.942 AMFE: -0.527 GC content %: 43.569 | |
| Atauschii_AET6Gv20944300.2 AET6Gv20944300.2 |
High | No | 1103 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.664 Folding energies... MFEI: -29.284 AMFE: -0.545 GC content %: 53.762 | |
| Atauschii_AET6Gv20944300.6 AET6Gv20944300.6 |
High | No | 992 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -29.536 AMFE: -0.530 GC content %: 55.746 | |
| Atauschii_AET6Gv20944300.7 AET6Gv20944300.7 |
Low | No | 1014 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -29.280 AMFE: -0.526 GC content %: 55.621 | |
| Atauschii_AET6Gv20944300.8 AET6Gv20944300.8 |
Low | No | 3900 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -28.995 AMFE: -0.652 GC content %: 44.462 | |
| Atauschii_AET6Gv20944300.9 AET6Gv20944300.9 |
Low | No | 435 | OG0003803 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -28.828 AMFE: -0.637 GC content %: 45.287 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20944300.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET6Gv20944300.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/TcMar-Stowaway; LTR/Gypsy; SINE/tRNA | |
| Atauschii_AET6Gv20944300.1 | SwissProt | 2021-04-01 | Q5ZK33 | 2.57e-5 |
| Atauschii_AET6Gv20944300.7 | SwissProt | 2021-04-01 | Q5ZK33 | 1.21e-5 |
| Atauschii_AET6Gv20944300.8 | SwissProt | 2021-04-01 | Q5ZK33 | 1.08e-4 |
| Atauschii_AET6Gv20944300.9 | SwissProt | 2021-04-01 | Q5ZK33 | 1.39e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
