Atauschii AET6Gv20953600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20953600 [ AET6Gv20953600] |
6D | 482003573 | 482023613 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20953600.12 AET6Gv20953600.12 |
High | No | 2392 | OG0079627 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -26.254 AMFE: -0.582 GC content %: 45.109 | |
| Atauschii_AET6Gv20953600.14 AET6Gv20953600.14 |
High | No | 1276 | OG0079628 | Get ORF Coding potential... Type: noncoding Potential: -1.365 Folding energies... MFEI: -26.356 AMFE: -0.606 GC content %: 43.495 | |
| Atauschii_AET6Gv20953600.26 AET6Gv20953600.26 |
Low | No | 1453 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -30.516 AMFE: -0.638 GC content %: 47.832 | |
| Atauschii_AET6Gv20953600.27 AET6Gv20953600.27 |
Low | No | 997 | OG0079629 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -26.249 AMFE: -0.584 GC content %: 44.935 | |
| Atauschii_AET6Gv20953600.30 AET6Gv20953600.30 |
Low | No | 870 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -27.598 AMFE: -0.616 GC content %: 44.828 | |
| Atauschii_AET6Gv20953600.31 AET6Gv20953600.31 |
Low | No | 1377 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -24.147 AMFE: -0.594 GC content %: 40.668 | |
| Atauschii_AET6Gv20953600.33 AET6Gv20953600.33 |
Low | No | 2632 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -25.099 AMFE: -0.598 GC content %: 41.983 | |
| Atauschii_AET6Gv20953600.34 AET6Gv20953600.34 |
Low | No | 617 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -27.715 AMFE: -0.545 GC content %: 50.891 | |
| Atauschii_AET6Gv20953600.37 AET6Gv20953600.37 |
Low | No | 1075 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -31.665 AMFE: -0.679 GC content %: 46.605 | |
| Atauschii_AET6Gv20953600.38 AET6Gv20953600.38 |
Low | No | 923 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -31.441 AMFE: -0.670 GC content %: 46.912 | |
| Atauschii_AET6Gv20953600.39 AET6Gv20953600.39 |
Low | No | 719 | OG0002955 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -28.095 AMFE: -0.673 GC content %: 41.725 | |
| Atauschii_AET6Gv20953600.47 AET6Gv20953600.47 |
Low | No | 304 | OG0079630 | Get ORF Coding potential... Type: noncoding Potential: -0.375 Folding energies... MFEI: -22.368 AMFE: -0.523 GC content %: 42.763 | |
| Atauschii_AET6Gv20953600.48 AET6Gv20953600.48 |
Low | No | 330 | OG0079631 | Get ORF Coding potential... Type: noncoding Potential: -0.189 Folding energies... MFEI: -25.667 AMFE: -0.539 GC content %: 47.576 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20953600.37 | SwissProt | 2021-04-01 | Q9ZP16 | 9.87e-8 |
| Atauschii_AET6Gv20953600.27 | SwissProt | 2021-04-01 | Q8GYA4 | 5.7e-8 |
| Atauschii_AET6Gv20953600.38 | SwissProt | 2021-04-01 | Q3E9X6 | 1.72e-8 |
| Atauschii_AET6Gv20953600.30 | SwissProt | 2021-04-01 | Q3E9X6 | 4.0e-8 |
| Atauschii_AET6Gv20953600.39 | SwissProt | 2021-04-01 | Q3E9X6 | 2.27e-8 |
| Atauschii_AET6Gv20953600.31 | SwissProt | 2021-04-01 | Q8GYA4 | 1.22e-7 |
| Atauschii_AET6Gv20953600.47 | SwissProt | 2021-04-01 | O81906 | 3.92e-13 |
| Atauschii_AET6Gv20953600.33 | SwissProt | 2021-04-01 | O64783 | 3.84e-10 |
| Atauschii_AET6Gv20953600.48 | SwissProt | 2021-04-01 | Q8GYA4 | 3.9e-17 |
| Atauschii_AET6Gv20953600.34 | SwissProt | 2021-04-01 | Q8GYA4 | 2.54e-6 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
