Atauschii AET6Gv20959300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20959300 [ AET6Gv20959300] |
6D | 483366864 | 483372204 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20959300.1 AET6Gv20959300.1 |
Low | No | 2873 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -26.676 AMFE: -0.679 GC content %: 39.262 | |
| Atauschii_AET6Gv20959300.11 AET6Gv20959300.11 |
Low | No | 2377 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -30.627 AMFE: -0.662 GC content %: 46.277 | |
| Atauschii_AET6Gv20959300.13 AET6Gv20959300.13 |
Low | No | 3240 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -28.488 AMFE: -0.663 GC content %: 42.994 | |
| Atauschii_AET6Gv20959300.15 AET6Gv20959300.15 |
Low | No | 2011 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -31.054 AMFE: -0.653 GC content %: 47.588 | |
| Atauschii_AET6Gv20959300.21 AET6Gv20959300.21 |
Low | No | 2236 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -30.725 AMFE: -0.661 GC content %: 46.512 | |
| Atauschii_AET6Gv20959300.23 AET6Gv20959300.23 |
High | No | 2413 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -29.830 AMFE: -0.655 GC content %: 45.545 | |
| Atauschii_AET6Gv20959300.25 AET6Gv20959300.25 |
Low | No | 3090 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -29.006 AMFE: -0.667 GC content %: 43.495 | |
| Atauschii_AET6Gv20959300.26 AET6Gv20959300.26 |
Low | No | 2986 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -28.808 AMFE: -0.659 GC content %: 43.737 | |
| Atauschii_AET6Gv20959300.27 AET6Gv20959300.27 |
Low | No | 2160 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -30.074 AMFE: -0.650 GC content %: 46.296 | |
| Atauschii_AET6Gv20959300.28 AET6Gv20959300.28 |
Low | No | 2969 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -28.501 AMFE: -0.650 GC content %: 43.853 | |
| Atauschii_AET6Gv20959300.30 AET6Gv20959300.30 |
Low | No | 2658 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -28.830 AMFE: -0.644 GC content %: 44.771 | |
| Atauschii_AET6Gv20959300.31 AET6Gv20959300.31 |
High | No | 1934 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -24.804 AMFE: -0.638 GC content %: 38.883 | |
| Atauschii_AET6Gv20959300.32 AET6Gv20959300.32 |
High | No | 1824 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -25.121 AMFE: -0.647 GC content %: 38.816 | |
| Atauschii_AET6Gv20959300.33 AET6Gv20959300.33 |
High | No | 1395 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -29.441 AMFE: -0.623 GC content %: 47.240 | |
| Atauschii_AET6Gv20959300.34 AET6Gv20959300.34 |
Low | No | 981 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -31.672 AMFE: -0.612 GC content %: 51.784 | |
| Atauschii_AET6Gv20959300.5 AET6Gv20959300.5 |
Low | No | 2194 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -31.048 AMFE: -0.668 GC content %: 46.445 | |
| Atauschii_AET6Gv20959300.6 AET6Gv20959300.6 |
Low | No | 2405 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -27.509 AMFE: -0.681 GC content %: 40.416 | |
| Atauschii_AET6Gv20959300.8 AET6Gv20959300.8 |
High | No | 1773 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -26.266 AMFE: -0.681 GC content %: 38.579 | |
| Atauschii_AET6Gv20959300.9 AET6Gv20959300.9 |
Low | No | 3137 | OG0000207 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -28.709 AMFE: -0.667 GC content %: 43.035 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20959300.34 | SwissProt | 2021-04-01 | Q9S9P3 | 6.88e-4 |
| Atauschii_AET6Gv20959300.25 | SwissProt | 2021-04-01 | Q9LIN9 | 2.62e-4 |
| Atauschii_AET6Gv20959300.1 | SwissProt | 2021-04-01 | Q9LIN9 | 2.4e-4 |
| Atauschii_AET6Gv20959300.5 | SwissProt | 2021-04-01 | Q9LIN9 | 1.7e-4 |
| Atauschii_AET6Gv20959300.26 | SwissProt | 2021-04-01 | Q9LIN9 | 2.19e-4 |
| Atauschii_AET6Gv20959300.11 | SwissProt | 2021-04-01 | Q9LIN9 | 1.88e-4 |
| Atauschii_AET6Gv20959300.6 | SwissProt | 2021-04-01 | Q9LIN9 | 1.92e-4 |
| Atauschii_AET6Gv20959300.27 | SwissProt | 2021-04-01 | Q9LIN9 | 1.66e-4 |
| Atauschii_AET6Gv20959300.13 | SwissProt | 2021-04-01 | Q9LIN9 | 2.77e-4 |
| Atauschii_AET6Gv20959300.9 | SwissProt | 2021-04-01 | Q9LIN9 | 2.67e-4 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
