Atauschii AET6Gv20996400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20996400 [ AET6Gv20996400] |
6D | 490923662 | 490980965 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20996400.1 AET6Gv20996400.1 |
High | No | 2168 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -29.285 AMFE: -0.606 GC content %: 48.293 | |
| Atauschii_AET6Gv20996400.100 AET6Gv20996400.100 |
High | No | 2202 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -28.524 AMFE: -0.602 GC content %: 47.366 | |
| Atauschii_AET6Gv20996400.101 AET6Gv20996400.101 |
High | No | 2169 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -28.967 AMFE: -0.604 GC content %: 47.994 | |
| Atauschii_AET6Gv20996400.102 AET6Gv20996400.102 |
High | No | 2107 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -29.326 AMFE: -0.605 GC content %: 48.458 | |
| Atauschii_AET6Gv20996400.103 AET6Gv20996400.103 |
High | No | 2071 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -29.334 AMFE: -0.605 GC content %: 48.479 | |
| Atauschii_AET6Gv20996400.104 AET6Gv20996400.104 |
High | No | 2003 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -29.391 AMFE: -0.603 GC content %: 48.777 | |
| Atauschii_AET6Gv20996400.105 AET6Gv20996400.105 |
High | No | 1347 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -30.765 AMFE: -0.627 GC content %: 49.072 | |
| Atauschii_AET6Gv20996400.106 AET6Gv20996400.106 |
High | No | 1363 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -30.352 AMFE: -0.609 GC content %: 49.817 | |
| Atauschii_AET6Gv20996400.107 AET6Gv20996400.107 |
High | No | 1819 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -29.186 AMFE: -0.594 GC content %: 49.148 | |
| Atauschii_AET6Gv20996400.108 AET6Gv20996400.108 |
High | No | 1918 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -28.889 AMFE: -0.592 GC content %: 48.801 | |
| Atauschii_AET6Gv20996400.109 AET6Gv20996400.109 |
High | No | 1557 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -29.261 AMFE: -0.580 GC content %: 50.482 | |
| Atauschii_AET6Gv20996400.110 AET6Gv20996400.110 |
High | No | 1763 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -29.234 AMFE: -0.592 GC content %: 49.348 | |
| Atauschii_AET6Gv20996400.111 AET6Gv20996400.111 |
High | No | 474 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -28.418 AMFE: -0.545 GC content %: 52.110 | |
| Atauschii_AET6Gv20996400.2 AET6Gv20996400.2 |
High | No | 2162 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -29.214 AMFE: -0.605 GC content %: 48.289 | |
| Atauschii_AET6Gv20996400.22 AET6Gv20996400.22 |
High | No | 1669 | OG0004828 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -28.053 AMFE: -0.616 GC content %: 45.536 | |
| Atauschii_AET6Gv20996400.23 AET6Gv20996400.23 |
High | No | 1256 | OG0004828 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -27.596 AMFE: -0.592 GC content %: 46.576 | |
| Atauschii_AET6Gv20996400.24 AET6Gv20996400.24 |
High | No | 1667 | OG0004828 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -27.948 AMFE: -0.615 GC content %: 45.471 | |
| Atauschii_AET6Gv20996400.25 AET6Gv20996400.25 |
High | No | 1232 | OG0004828 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -28.011 AMFE: -0.603 GC content %: 46.429 | |
| Atauschii_AET6Gv20996400.26 AET6Gv20996400.26 |
High | No | 1780 | OG0004828 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -27.899 AMFE: -0.623 GC content %: 44.775 | |
| Atauschii_AET6Gv20996400.27 AET6Gv20996400.27 |
High | No | 818 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -25.709 AMFE: -0.532 GC content %: 48.289 | |
| Atauschii_AET6Gv20996400.28 AET6Gv20996400.28 |
High | No | 928 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.347 Folding energies... MFEI: -25.269 AMFE: -0.532 GC content %: 47.522 | |
| Atauschii_AET6Gv20996400.3 AET6Gv20996400.3 |
High | No | 2152 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -29.280 AMFE: -0.608 GC content %: 48.188 | |
| Atauschii_AET6Gv20996400.30 AET6Gv20996400.30 |
Low | No | 926 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -38.369 AMFE: -0.668 GC content %: 57.451 | |
| Atauschii_AET6Gv20996400.31 AET6Gv20996400.31 |
Low | No | 1078 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -37.403 AMFE: -0.679 GC content %: 55.102 | |
| Atauschii_AET6Gv20996400.32 AET6Gv20996400.32 |
Low | No | 1028 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -40.817 AMFE: -0.674 GC content %: 60.603 | |
| Atauschii_AET6Gv20996400.4 AET6Gv20996400.4 |
High | No | 1443 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -30.249 AMFE: -0.632 GC content %: 47.886 | |
| Atauschii_AET6Gv20996400.40 AET6Gv20996400.40 |
Low | No | 815 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -39.153 AMFE: -0.658 GC content %: 59.509 | |
| Atauschii_AET6Gv20996400.41 AET6Gv20996400.41 |
Low | No | 569 | OG0079705 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -42.882 AMFE: -0.649 GC content %: 66.081 | |
| Atauschii_AET6Gv20996400.42 AET6Gv20996400.42 |
Low | No | 556 | OG0079706 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -42.608 AMFE: -0.639 GC content %: 66.727 | |
| Atauschii_AET6Gv20996400.43 AET6Gv20996400.43 |
Low | No | 913 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -37.568 AMFE: -0.663 GC content %: 56.627 | |
| Atauschii_AET6Gv20996400.44 AET6Gv20996400.44 |
Low | No | 858 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -38.450 AMFE: -0.665 GC content %: 57.809 | |
| Atauschii_AET6Gv20996400.45 AET6Gv20996400.45 |
Low | No | 902 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -41.164 AMFE: -0.693 GC content %: 59.424 | |
| Atauschii_AET6Gv20996400.46 AET6Gv20996400.46 |
Low | No | 450 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -34.111 AMFE: -0.634 GC content %: 53.778 | |
| Atauschii_AET6Gv20996400.47 AET6Gv20996400.47 |
High | No | 2426 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -29.275 AMFE: -0.613 GC content %: 47.774 | |
| Atauschii_AET6Gv20996400.5 AET6Gv20996400.5 |
High | No | 1059 | OG0004828 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -30.368 AMFE: -0.605 GC content %: 50.236 | |
| Atauschii_AET6Gv20996400.55 AET6Gv20996400.55 |
High | No | 878 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -25.831 AMFE: -0.671 GC content %: 38.497 | |
| Atauschii_AET6Gv20996400.56 AET6Gv20996400.56 |
High | No | 308 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -26.883 AMFE: -0.673 GC content %: 39.935 | |
| Atauschii_AET6Gv20996400.57 AET6Gv20996400.57 |
High | No | 440 | OG0079707 | Get ORF Coding potential... Type: noncoding Potential: -1.441 Folding energies... MFEI: -21.773 AMFE: -0.521 GC content %: 41.818 | |
| Atauschii_AET6Gv20996400.60 AET6Gv20996400.60 |
High | No | 803 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -28.144 AMFE: -0.706 GC content %: 39.851 | |
| Atauschii_AET6Gv20996400.61 AET6Gv20996400.61 |
High | No | 2608 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -29.456 AMFE: -0.628 GC content %: 46.933 | |
| Atauschii_AET6Gv20996400.63 AET6Gv20996400.63 |
High | No | 681 | OG0001325 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -27.034 AMFE: -0.610 GC content %: 44.347 | |
| Atauschii_AET6Gv20996400.64 AET6Gv20996400.64 |
High | No | 1431 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -28.896 AMFE: -0.643 GC content %: 44.934 | |
| Atauschii_AET6Gv20996400.91 AET6Gv20996400.91 |
High | No | 1911 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -33.616 AMFE: -0.664 GC content %: 50.602 | |
| Atauschii_AET6Gv20996400.98 AET6Gv20996400.98 |
High | No | 2197 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -31.693 AMFE: -0.628 GC content %: 50.478 | |
| Atauschii_AET6Gv20996400.99 AET6Gv20996400.99 |
High | No | 2196 | OG0000328 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -31.872 AMFE: -0.632 GC content %: 50.455 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20996400.43 | SwissProt | 2021-04-01 | Q6K9X3 | 7.28e-6 |
| Atauschii_AET6Gv20996400.31 | SwissProt | 2021-04-01 | Q6K9X3 | 5.69e-6 |
| Atauschii_AET6Gv20996400.44 | SwissProt | 2021-04-01 | Q6K9X3 | 6.28e-6 |
| Atauschii_AET6Gv20996400.32 | SwissProt | 2021-04-01 | Q6K9X3 | 8.51e-6 |
| Atauschii_AET6Gv20996400.45 | SwissProt | 2021-04-01 | Q6K9X3 | 4.69e-6 |
| Atauschii_AET6Gv20996400.40 | SwissProt | 2021-04-01 | Q6K9X3 | 4.94e-6 |
| Atauschii_AET6Gv20996400.46 | SwissProt | 2021-04-01 | Q71N54 | 1.0e-4 |
| Atauschii_AET6Gv20996400.41 | SwissProt | 2021-04-01 | Q6K9X3 | 1.79e-6 |
| Atauschii_AET6Gv20996400.42 | SwissProt | 2021-04-01 | Q6K9X3 | 1.14e-6 |
| Atauschii_AET6Gv20996400.30 | SwissProt | 2021-04-01 | Q6K9X3 | 5.41e-6 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
