GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20028400 [ AET7Gv20028400]	7D	5830609	5833668	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20028400.2 AET7Gv20028400.2	High	No	1465	OG0007081		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -32.785 AMFE: -0.652 GC content %: 50.307
Atauschii_AET7Gv20028400.4 AET7Gv20028400.4	High	No	1058	OG0007081		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -35.444 AMFE: -0.676 GC content %: 52.457
Atauschii_AET7Gv20028400.5 AET7Gv20028400.5	High	No	942	OG0007081		Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -35.711 AMFE: -0.676 GC content %: 52.866
Atauschii_AET7Gv20028400.6 AET7Gv20028400.6	High	No	921	OG0007081		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -31.857 AMFE: -0.655 GC content %: 48.643
Atauschii_AET7Gv20028400.7 AET7Gv20028400.7	High	No	1175	OG0007081		Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -31.617 AMFE: -0.668 GC content %: 47.319

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).