GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20092700 [ AET7Gv20092700]	7D	18559047	18561308	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20092700.1 AET7Gv20092700.1	High	No	563	OG0000623		Get ORF Coding potential... Type: noncoding Potential: -0.593 Folding energies... MFEI: -31.279 AMFE: -0.575 GC content %: 54.352
Atauschii_AET7Gv20092700.2 AET7Gv20092700.2	High	No	745	OG0000623		Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -31.356 AMFE: -0.578 GC content %: 54.228
Atauschii_AET7Gv20092700.3 AET7Gv20092700.3	High	No	660	OG0000623		Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -30.000 AMFE: -0.544 GC content %: 55.152
Atauschii_AET7Gv20092700.4 AET7Gv20092700.4	High	No	892	OG0000623		Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -28.307 AMFE: -0.610 GC content %: 46.413
Atauschii_AET7Gv20092700.5 AET7Gv20092700.5	High	No	256	OG0000623		Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -29.609 AMFE: -0.492 GC content %: 60.156

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).