GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20104800 [ AET7Gv20104800]	7D	20552186	20557993	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20104800.10 AET7Gv20104800.10	High	No	370	OG0016699		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -23.351 AMFE: -0.565 GC content %: 41.351
Atauschii_AET7Gv20104800.5 AET7Gv20104800.5	High	No	1475	OG0016699		Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -28.773 AMFE: -0.635 GC content %: 45.288
Atauschii_AET7Gv20104800.6 AET7Gv20104800.6	High	No	1682	OG0016699		Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -27.289 AMFE: -0.683 GC content %: 39.952

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).