Atauschii AET7Gv20111100

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Atauschii_AET7Gv20111100
[ AET7Gv20111100]
7D 23224016 23226945 v4 Aegilops tauschii (Ensembl Plants 51)
Coding?
Yes


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Atauschii_AET7Gv20111100.10
AET7Gv20111100.10
High No 461 OG0026094
Coding potential...
Type: noncoding Potential: -1.333
Folding energies...
MFEI: -25.965 AMFE: -0.527
GC content
%: 49.241
Atauschii_AET7Gv20111100.9
AET7Gv20111100.9
High No 288 OG0026094
Coding potential...
Type: noncoding Potential: -1.199
Folding energies...
MFEI: -22.535 AMFE: -0.477
GC content
%: 47.222


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Atauschii_AET7Gv20111100.png