Atauschii AET7Gv20139500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20139500 [ AET7Gv20139500] |
7D | 29787396 | 29800984 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20139500.1 AET7Gv20139500.1 |
High | No | 522 | OG0001929 | Get ORF Coding potential... Type: noncoding Potential: -0.316 Folding energies... MFEI: -31.916 AMFE: -0.613 GC content %: 52.107 | |
| Atauschii_AET7Gv20139500.2 AET7Gv20139500.2 |
High | No | 1172 | OG0004831 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -26.186 AMFE: -0.634 GC content %: 41.297 | |
| Atauschii_AET7Gv20139500.3 AET7Gv20139500.3 |
High | No | 1198 | OG0001929 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -30.626 AMFE: -0.647 GC content %: 47.329 | |
| Atauschii_AET7Gv20139500.4 AET7Gv20139500.4 |
High | No | 1073 | OG0004831 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -29.581 AMFE: -0.667 GC content %: 44.362 | |
| Atauschii_AET7Gv20139500.5 AET7Gv20139500.5 |
High | No | 727 | OG0004831 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -28.061 AMFE: -0.642 GC content %: 43.741 | |
| Atauschii_AET7Gv20139500.7 AET7Gv20139500.7 |
High | No | 460 | OG0004831 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -28.348 AMFE: -0.652 GC content %: 43.478 | |
| Atauschii_AET7Gv20139500.8 AET7Gv20139500.8 |
High | No | 507 | OG0001929 | Get ORF Coding potential... Type: noncoding Potential: -0.323 Folding energies... MFEI: -31.085 AMFE: -0.595 GC content %: 52.268 | |
| Atauschii_AET7Gv20139500.9 AET7Gv20139500.9 |
High | No | 433 | OG0079923 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -34.018 AMFE: -0.622 GC content %: 54.734 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
