Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv20156500 [ AET7Gv20156500] |
7D | 32664948 | 32678692 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv20156500.23 AET7Gv20156500.23 |
Low | No | 893 | OG0079938 | Get ORF Coding potential... Type: noncoding Potential: -0.148 Folding energies... MFEI: -27.447 AMFE: -0.654 GC content %: 41.993 | |
Atauschii_AET7Gv20156500.24 AET7Gv20156500.24 |
High | No | 574 | OG0079939 | Get ORF Coding potential... Type: noncoding Potential: -1.414 Folding energies... MFEI: -23.868 AMFE: -0.606 GC content %: 39.373 | |
Atauschii_AET7Gv20156500.25 AET7Gv20156500.25 |
High | No | 291 | OG0016702 | Get ORF Coding potential... Type: noncoding Potential: -0.332 Folding energies... MFEI: -25.292 AMFE: -0.545 GC content %: 46.392 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET7Gv20156500.23 | SwissProt | 2021-04-01 | Q6DDU8 | 1.05e-16 |