GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20216200 [ AET7Gv20216200]	7D	44406963	44410340	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20216200.1 AET7Gv20216200.1	High	No	362	OG0079993		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -35.635 AMFE: -0.492 GC content %: 72.376
Atauschii_AET7Gv20216200.3 AET7Gv20216200.3	High	No	272	OG0079994		Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -47.721 AMFE: -0.690 GC content %: 69.118
Atauschii_AET7Gv20216200.5 AET7Gv20216200.5	High	No	397	OG0016708		Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -30.605 AMFE: -0.570 GC content %: 53.652
Atauschii_AET7Gv20216200.6 AET7Gv20216200.6	High	No	336	OG0016708		Get ORF Coding potential... Type: noncoding Potential: -0.407 Folding energies... MFEI: -31.964 AMFE: -0.621 GC content %: 51.488
Atauschii_AET7Gv20216200.7 AET7Gv20216200.7	High	No	928	OG0016708		Get ORF Coding potential... Type: noncoding Potential: -0.421 Folding energies... MFEI: -30.172 AMFE: -0.636 GC content %: 47.414

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).