GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20268800 [ AET7Gv20268800]	7D	59159272	59160195	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20268800.1 AET7Gv20268800.1	High	No	434	OG0000484		Get ORF Coding potential... Type: noncoding Potential: -0.160 Folding energies... MFEI: -25.714 AMFE: -0.607 GC content %: 42.396
Atauschii_AET7Gv20268800.2 AET7Gv20268800.2	Low	No	426	OG0000484		Get ORF Coding potential... Type: noncoding Potential: -0.149 Folding energies... MFEI: -25.657 AMFE: -0.591 GC content %: 43.427
Atauschii_AET7Gv20268800.3 AET7Gv20268800.3	Low	No	414	OG0000484		Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -25.531 AMFE: -0.587 GC content %: 43.478

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv20268800.2	SwissProt	2021-04-01	Q2HIJ8	4.26e-6
Atauschii_AET7Gv20268800.3	SwissProt	2021-04-01	Q2HIJ8	2.82e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).