Atauschii AET7Gv20295800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20295800 [ AET7Gv20295800] |
7D | 70228145 | 70231178 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20295800.10 AET7Gv20295800.10 |
High | No | 1194 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -26.776 AMFE: -0.652 GC content %: 41.039 | |
| Atauschii_AET7Gv20295800.12 AET7Gv20295800.12 |
High | No | 1025 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -27.766 AMFE: -0.713 GC content %: 38.927 | |
| Atauschii_AET7Gv20295800.13 AET7Gv20295800.13 |
High | No | 736 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -23.261 AMFE: -0.597 GC content %: 38.995 | |
| Atauschii_AET7Gv20295800.16 AET7Gv20295800.16 |
High | No | 497 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -25.191 AMFE: -0.620 GC content %: 40.644 | |
| Atauschii_AET7Gv20295800.17 AET7Gv20295800.17 |
High | No | 1450 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -26.917 AMFE: -0.682 GC content %: 39.448 | |
| Atauschii_AET7Gv20295800.18 AET7Gv20295800.18 |
High | No | 907 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -27.663 AMFE: -0.691 GC content %: 40.022 | |
| Atauschii_AET7Gv20295800.19 AET7Gv20295800.19 |
High | No | 1460 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.617 Folding energies... MFEI: -27.219 AMFE: -0.689 GC content %: 39.521 | |
| Atauschii_AET7Gv20295800.2 AET7Gv20295800.2 |
High | No | 1334 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -25.652 AMFE: -0.670 GC content %: 38.306 | |
| Atauschii_AET7Gv20295800.20 AET7Gv20295800.20 |
High | No | 2322 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -26.705 AMFE: -0.700 GC content %: 38.157 | |
| Atauschii_AET7Gv20295800.22 AET7Gv20295800.22 |
High | No | 1504 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -25.751 AMFE: -0.690 GC content %: 37.301 | |
| Atauschii_AET7Gv20295800.3 AET7Gv20295800.3 |
High | No | 1999 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -26.718 AMFE: -0.691 GC content %: 38.669 | |
| Atauschii_AET7Gv20295800.5 AET7Gv20295800.5 |
High | No | 1287 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -25.929 AMFE: -0.670 GC content %: 38.695 | |
| Atauschii_AET7Gv20295800.6 AET7Gv20295800.6 |
High | No | 1380 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -24.986 AMFE: -0.662 GC content %: 37.754 | |
| Atauschii_AET7Gv20295800.7 AET7Gv20295800.7 |
High | No | 342 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.279 Folding energies... MFEI: -26.842 AMFE: -0.588 GC content %: 45.614 | |
| Atauschii_AET7Gv20295800.8 AET7Gv20295800.8 |
High | No | 631 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -26.783 AMFE: -0.643 GC content %: 41.680 | |
| Atauschii_AET7Gv20295800.9 AET7Gv20295800.9 |
High | No | 756 | OG0000326 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -28.558 AMFE: -0.706 GC content %: 40.476 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
