Atauschii AET7Gv20305600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20305600 [ AET7Gv20305600] |
7D | 72495981 | 72501510 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20305600.1 AET7Gv20305600.1 |
High | No | 1502 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -36.192 AMFE: -0.663 GC content %: 54.594 | |
| Atauschii_AET7Gv20305600.10 AET7Gv20305600.10 |
High | No | 674 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -34.481 AMFE: -0.674 GC content %: 51.187 | |
| Atauschii_AET7Gv20305600.11 AET7Gv20305600.11 |
High | No | 1232 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -32.606 AMFE: -0.717 GC content %: 45.455 | |
| Atauschii_AET7Gv20305600.12 AET7Gv20305600.12 |
High | No | 547 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.529 Folding energies... MFEI: -31.737 AMFE: -0.663 GC content %: 47.898 | |
| Atauschii_AET7Gv20305600.13 AET7Gv20305600.13 |
High | No | 1126 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -32.460 AMFE: -0.708 GC content %: 45.826 | |
| Atauschii_AET7Gv20305600.14 AET7Gv20305600.14 |
High | No | 1434 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -30.593 AMFE: -0.655 GC content %: 46.722 | |
| Atauschii_AET7Gv20305600.15 AET7Gv20305600.15 |
High | No | 1178 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -31.757 AMFE: -0.706 GC content %: 44.992 | |
| Atauschii_AET7Gv20305600.16 AET7Gv20305600.16 |
High | No | 1137 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -34.697 AMFE: -0.706 GC content %: 49.164 | |
| Atauschii_AET7Gv20305600.17 AET7Gv20305600.17 |
High | No | 1176 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -32.100 AMFE: -0.718 GC content %: 44.728 | |
| Atauschii_AET7Gv20305600.18 AET7Gv20305600.18 |
High | No | 1076 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -32.110 AMFE: -0.714 GC content %: 44.981 | |
| Atauschii_AET7Gv20305600.19 AET7Gv20305600.19 |
High | No | 1079 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -31.965 AMFE: -0.711 GC content %: 44.949 | |
| Atauschii_AET7Gv20305600.2 AET7Gv20305600.2 |
High | No | 1623 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -35.705 AMFE: -0.680 GC content %: 52.495 | |
| Atauschii_AET7Gv20305600.20 AET7Gv20305600.20 |
High | No | 940 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -31.351 AMFE: -0.685 GC content %: 45.745 | |
| Atauschii_AET7Gv20305600.21 AET7Gv20305600.21 |
High | No | 1021 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -31.450 AMFE: -0.723 GC content %: 43.487 | |
| Atauschii_AET7Gv20305600.22 AET7Gv20305600.22 |
High | No | 375 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -31.547 AMFE: -0.657 GC content %: 48.000 | |
| Atauschii_AET7Gv20305600.23 AET7Gv20305600.23 |
High | No | 942 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -27.081 AMFE: -0.675 GC content %: 40.127 | |
| Atauschii_AET7Gv20305600.24 AET7Gv20305600.24 |
High | No | 1201 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -26.445 AMFE: -0.625 GC content %: 42.298 | |
| Atauschii_AET7Gv20305600.25 AET7Gv20305600.25 |
High | No | 1523 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -24.209 AMFE: -0.616 GC content %: 39.330 | |
| Atauschii_AET7Gv20305600.3 AET7Gv20305600.3 |
High | No | 1545 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -36.570 AMFE: -0.690 GC content %: 53.010 | |
| Atauschii_AET7Gv20305600.4 AET7Gv20305600.4 |
High | No | 1498 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -36.569 AMFE: -0.684 GC content %: 53.471 | |
| Atauschii_AET7Gv20305600.5 AET7Gv20305600.5 |
High | No | 1286 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -37.263 AMFE: -0.673 GC content %: 55.365 | |
| Atauschii_AET7Gv20305600.6 AET7Gv20305600.6 |
High | No | 1406 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -36.486 AMFE: -0.674 GC content %: 54.125 | |
| Atauschii_AET7Gv20305600.7 AET7Gv20305600.7 |
High | No | 1438 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -36.092 AMFE: -0.670 GC content %: 53.894 | |
| Atauschii_AET7Gv20305600.8 AET7Gv20305600.8 |
High | No | 1355 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -36.391 AMFE: -0.661 GC content %: 55.055 | |
| Atauschii_AET7Gv20305600.9 AET7Gv20305600.9 |
High | No | 1482 | OG0000193 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -36.417 AMFE: -0.671 GC content %: 54.251 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
