GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20324700 [ AET7Gv20324700]	7D	80267333	80275569	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20324700.15 AET7Gv20324700.15	High	No	498	OG0026138		Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -24.779 AMFE: -0.602 GC content %: 41.165
Atauschii_AET7Gv20324700.16 AET7Gv20324700.16	High	No	372	OG0026138		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -23.172 AMFE: -0.563 GC content %: 41.129
Atauschii_AET7Gv20324700.17 AET7Gv20324700.17	High	No	338	OG0080172		Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -21.095 AMFE: -0.561 GC content %: 37.574

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).