Atauschii AET7Gv20374900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20374900 [ AET7Gv20374900] |
7D | 99554155 | 99557430 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20374900.1 AET7Gv20374900.1 |
High | No | 753 | OG0003811 | Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -29.827 AMFE: -0.634 GC content %: 47.012 | |
| Atauschii_AET7Gv20374900.10 AET7Gv20374900.10 |
High | No | 300 | OG0080251 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -26.667 AMFE: -0.559 GC content %: 47.667 | |
| Atauschii_AET7Gv20374900.11 AET7Gv20374900.11 |
High | No | 326 | OG0080252 | Get ORF Coding potential... Type: noncoding Potential: -0.501 Folding energies... MFEI: -25.399 AMFE: -0.571 GC content %: 44.479 | |
| Atauschii_AET7Gv20374900.2 AET7Gv20374900.2 |
High | No | 896 | OG0003811 | Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -28.225 AMFE: -0.609 GC content %: 46.317 | |
| Atauschii_AET7Gv20374900.3 AET7Gv20374900.3 |
High | No | 357 | OG0003811 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -24.818 AMFE: -0.607 GC content %: 40.896 | |
| Atauschii_AET7Gv20374900.4 AET7Gv20374900.4 |
High | No | 769 | OG0003811 | Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -28.401 AMFE: -0.592 GC content %: 47.984 | |
| Atauschii_AET7Gv20374900.5 AET7Gv20374900.5 |
High | No | 765 | OG0003811 | Get ORF Coding potential... Type: noncoding Potential: -0.582 Folding energies... MFEI: -28.275 AMFE: -0.589 GC content %: 47.974 | |
| Atauschii_AET7Gv20374900.6 AET7Gv20374900.6 |
High | No | 641 | OG0003811 | Get ORF Coding potential... Type: noncoding Potential: -0.533 Folding energies... MFEI: -28.908 AMFE: -0.604 GC content %: 47.894 | |
| Atauschii_AET7Gv20374900.7 AET7Gv20374900.7 |
High | No | 618 | OG0001595 | Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -30.340 AMFE: -0.623 GC content %: 48.706 | |
| Atauschii_AET7Gv20374900.8 AET7Gv20374900.8 |
High | No | 558 | OG0000886 | Get ORF Coding potential... Type: noncoding Potential: -0.493 Folding energies... MFEI: -29.857 AMFE: -0.613 GC content %: 48.746 | |
| Atauschii_AET7Gv20374900.9 AET7Gv20374900.9 |
High | No | 641 | OG0080253 | Get ORF Coding potential... Type: noncoding Potential: -0.638 Folding energies... MFEI: -28.066 AMFE: -0.578 GC content %: 48.518 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
