Atauschii AET7Gv20376900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20376900 [ AET7Gv20376900] |
7D | 100672098 | 100673447 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20376900.2 AET7Gv20376900.2 |
Low | No | 701 | OG0002957 | Get ORF Coding potential... Type: noncoding Potential: -0.823 Folding energies... MFEI: -30.271 AMFE: -0.613 GC content %: 49.358 | |
| Atauschii_AET7Gv20376900.4 AET7Gv20376900.4 |
Low | No | 782 | OG0002957 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -30.026 AMFE: -0.658 GC content %: 45.652 | |
| Atauschii_AET7Gv20376900.5 AET7Gv20376900.5 |
Low | No | 757 | OG0002957 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -31.493 AMFE: -0.639 GC content %: 49.273 | |
| Atauschii_AET7Gv20376900.6 AET7Gv20376900.6 |
High | No | 347 | OG0002957 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -31.182 AMFE: -0.636 GC content %: 48.991 | |
| Atauschii_AET7Gv20376900.9 AET7Gv20376900.9 |
Low | No | 726 | OG0002957 | Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -31.543 AMFE: -0.616 GC content %: 51.240 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20376900.2 | SwissProt | 2021-04-01 | Q7M1B9 | 9.53e-6 |
| Atauschii_AET7Gv20376900.4 | SwissProt | 2021-04-01 | Q7M1B9 | 1.17e-5 |
| Atauschii_AET7Gv20376900.5 | SwissProt | 2021-04-01 | Q7M1B9 | 1.1e-5 |
| Atauschii_AET7Gv20376900.9 | SwissProt | 2021-04-01 | Q39362 | 7.95e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
