Atauschii AET7Gv20392200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20392200 [ AET7Gv20392200] |
7D | 106833192 | 106837604 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20392200.29 AET7Gv20392200.29 |
High | No | 1678 | OG0004837 | Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -30.793 AMFE: -0.680 GC content %: 45.292 | |
| Atauschii_AET7Gv20392200.30 AET7Gv20392200.30 |
High | No | 1179 | OG0004837 | Get ORF Coding potential... Type: noncoding Potential: -0.638 Folding energies... MFEI: -30.679 AMFE: -0.655 GC content %: 46.819 | |
| Atauschii_AET7Gv20392200.31 AET7Gv20392200.31 |
High | No | 1034 | OG0004837 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -31.876 AMFE: -0.654 GC content %: 48.743 | |
| Atauschii_AET7Gv20392200.32 AET7Gv20392200.32 |
High | No | 1260 | OG0004837 | Get ORF Coding potential... Type: noncoding Potential: -0.326 Folding energies... MFEI: -31.524 AMFE: -0.664 GC content %: 47.460 | |
| Atauschii_AET7Gv20392200.34 AET7Gv20392200.34 |
High | No | 1073 | OG0004837 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -27.726 AMFE: -0.651 GC content %: 42.591 | |
| Atauschii_AET7Gv20392200.36 AET7Gv20392200.36 |
High | No | 569 | OG0004837 | Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -25.554 AMFE: -0.598 GC content %: 42.707 | |
| Atauschii_AET7Gv20392200.37 AET7Gv20392200.37 |
High | No | 643 | OG0003813 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -22.737 AMFE: -0.582 GC content %: 39.036 | |
| Atauschii_AET7Gv20392200.38 AET7Gv20392200.38 |
High | No | 805 | OG0080278 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -19.851 AMFE: -0.509 GC content %: 39.006 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
