GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20429300 [ AET7Gv20429300]	7D	116973523	116976645	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20429300.2 AET7Gv20429300.2	High	No	2299	OG0007090		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -27.067 AMFE: -0.637 GC content %: 42.497
Atauschii_AET7Gv20429300.27 AET7Gv20429300.27	High	No	1793	OG0007090		Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -25.537 AMFE: -0.685 GC content %: 37.256
Atauschii_AET7Gv20429300.3 AET7Gv20429300.3	High	No	2491	OG0007090		Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -26.913 AMFE: -0.638 GC content %: 42.152
Atauschii_AET7Gv20429300.4 AET7Gv20429300.4	High	No	2919	OG0007090		Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -26.618 AMFE: -0.647 GC content %: 41.144
Atauschii_AET7Gv20429300.9 AET7Gv20429300.9	High	No	3083	OG0007090		Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -26.279 AMFE: -0.643 GC content %: 40.869

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).