Atauschii AET7Gv20434300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20434300 [ AET7Gv20434300] |
7D | 119373244 | 119379244 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20434300.10 AET7Gv20434300.10 |
Low | No | 1358 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -32.253 AMFE: -0.641 GC content %: 50.295 | |
| Atauschii_AET7Gv20434300.11 AET7Gv20434300.11 |
Low | No | 1389 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -31.649 AMFE: -0.639 GC content %: 49.532 | |
| Atauschii_AET7Gv20434300.12 AET7Gv20434300.12 |
Low | No | 508 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -32.835 AMFE: -0.667 GC content %: 49.213 | |
| Atauschii_AET7Gv20434300.14 AET7Gv20434300.14 |
Low | No | 1185 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -31.004 AMFE: -0.633 GC content %: 48.945 | |
| Atauschii_AET7Gv20434300.15 AET7Gv20434300.15 |
Low | No | 1011 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -32.502 AMFE: -0.627 GC content %: 51.830 | |
| Atauschii_AET7Gv20434300.16 AET7Gv20434300.16 |
Low | No | 752 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -31.463 AMFE: -0.602 GC content %: 52.261 | |
| Atauschii_AET7Gv20434300.17 AET7Gv20434300.17 |
Low | No | 1330 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -29.782 AMFE: -0.637 GC content %: 46.767 | |
| Atauschii_AET7Gv20434300.2 AET7Gv20434300.2 |
Low | No | 1897 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -33.906 AMFE: -0.634 GC content %: 53.453 | |
| Atauschii_AET7Gv20434300.3 AET7Gv20434300.3 |
Low | No | 2412 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -32.960 AMFE: -0.646 GC content %: 51.036 | |
| Atauschii_AET7Gv20434300.4 AET7Gv20434300.4 |
Low | No | 2100 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -33.324 AMFE: -0.639 GC content %: 52.143 | |
| Atauschii_AET7Gv20434300.5 AET7Gv20434300.5 |
Low | No | 2048 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -33.286 AMFE: -0.638 GC content %: 52.197 | |
| Atauschii_AET7Gv20434300.6 AET7Gv20434300.6 |
Low | No | 1890 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -32.651 AMFE: -0.628 GC content %: 51.958 | |
| Atauschii_AET7Gv20434300.8 AET7Gv20434300.8 |
Low | No | 1593 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -32.097 AMFE: -0.636 GC content %: 50.471 | |
| Atauschii_AET7Gv20434300.9 AET7Gv20434300.9 |
Low | No | 1550 | OG0001010 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -32.974 AMFE: -0.651 GC content %: 50.645 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20434300.15 | SwissProt | 2021-04-01 | Q8VY91 | 3.3e-6 |
| Atauschii_AET7Gv20434300.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20434300.11 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20434300.5 | SwissProt | 2021-04-01 | Q8VY91 | 8.63e-6 |
| Atauschii_AET7Gv20434300.16 | SwissProt | 2021-04-01 | Q8VY91 | 1.07e-5 |
| Atauschii_AET7Gv20434300.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20434300.10 | SwissProt | 2021-04-01 | Q8VY91 | 5.09e-6 |
| Atauschii_AET7Gv20434300.12 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET7Gv20434300.6 | SwissProt | 2021-04-01 | Q8VY91 | 7.83e-6 |
| Atauschii_AET7Gv20434300.17 | SwissProt | 2021-04-01 | Q8VY91 | 2.67e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
