Atauschii AET7Gv20435400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20435400 [ AET7Gv20435400] |
7D | 119917800 | 119921740 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20435400.1 AET7Gv20435400.1 |
High | No | 994 | OG0007092 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -34.185 AMFE: -0.620 GC content %: 55.131 | |
| Atauschii_AET7Gv20435400.2 AET7Gv20435400.2 |
High | No | 214 | OG0080321 | Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -30.794 AMFE: -0.431 GC content %: 71.495 | |
| Atauschii_AET7Gv20435400.4 AET7Gv20435400.4 |
High | No | 476 | OG0007092 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -35.210 AMFE: -0.570 GC content %: 61.765 | |
| Atauschii_AET7Gv20435400.5 AET7Gv20435400.5 |
High | No | 630 | OG0007092 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -30.889 AMFE: -0.651 GC content %: 47.460 | |
| Atauschii_AET7Gv20435400.6 AET7Gv20435400.6 |
High | No | 514 | OG0007092 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -28.152 AMFE: -0.629 GC content %: 44.747 | |
| Atauschii_AET7Gv20435400.7 AET7Gv20435400.7 |
High | No | 393 | OG0007092 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -26.565 AMFE: -0.603 GC content %: 44.020 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
