GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20439400 [ AET7Gv20439400]	7D	122057338	122058629	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20439400.1 AET7Gv20439400.1	High	No	1076	OG0016739		Get ORF Coding potential... Type: noncoding Potential: -0.443 Folding energies... MFEI: -38.532 AMFE: -0.629 GC content %: 61.245
Atauschii_AET7Gv20439400.2 AET7Gv20439400.2	High	No	961	OG0016739		Get ORF Coding potential... Type: noncoding Potential: -0.431 Folding energies... MFEI: -39.688 AMFE: -0.642 GC content %: 61.811
Atauschii_AET7Gv20439400.4 AET7Gv20439400.4	High	No	534	OG0016739		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -33.296 AMFE: -0.628 GC content %: 52.996

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).