Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv20447900 [ AET7Gv20447900] |
7D | 126494561 | 126497403 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET7Gv20447900.1 AET7Gv20447900.1 |
Low | No | 730 | OG0010194 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -33.877 AMFE: -0.721 GC content %: 46.986 | |
Atauschii_AET7Gv20447900.3 AET7Gv20447900.3 |
Low | No | 1744 | OG0010194 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -38.876 AMFE: -0.690 GC content %: 56.307 | |
Atauschii_AET7Gv20447900.4 AET7Gv20447900.4 |
Low | No | 1222 | OG0010194 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -37.962 AMFE: -0.656 GC content %: 57.856 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET7Gv20447900.4 | SwissProt | 2021-04-01 | A2X9W8 | 5.79e-6 |
Atauschii_AET7Gv20447900.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
Atauschii_AET7Gv20447900.3 | SwissProt | 2021-04-01 | Q6Z6G5 | 1.57e-6 |