GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET7Gv20464500 [ AET7Gv20464500]	7D	136856193	136863476	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET7Gv20464500.1 AET7Gv20464500.1	Low	No	3459	OG0010196		Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -28.849 AMFE: -0.683 GC content %: 42.238
Atauschii_AET7Gv20464500.2 AET7Gv20464500.2	Low	No	3546	OG0010196		Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -28.866 AMFE: -0.685 GC content %: 42.132
Atauschii_AET7Gv20464500.3 AET7Gv20464500.3	High	No	1016	OG0010196		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -30.886 AMFE: -0.661 GC content %: 46.752
Atauschii_AET7Gv20464500.4 AET7Gv20464500.4	High	No	1367	OG0010196		Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -27.879 AMFE: -0.662 GC content %: 42.136

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET7Gv20464500.1	SwissProt	2021-04-01	Q9SBF3	3.91e-15
Atauschii_AET7Gv20464500.2	SwissProt	2021-04-01	Q9SBF3	4.03e-15

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).