Atauschii AET7Gv20467300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20467300 [ AET7Gv20467300] |
7D | 137929077 | 138115390 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20467300.11 AET7Gv20467300.11 |
High | No | 352 | OG0080370 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -36.307 AMFE: -0.539 GC content %: 67.330 | |
| Atauschii_AET7Gv20467300.18 AET7Gv20467300.18 |
Low | No | 1131 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.331 Folding energies... MFEI: -25.615 AMFE: -0.666 GC content %: 38.462 | |
| Atauschii_AET7Gv20467300.19 AET7Gv20467300.19 |
Low | Yes | 2694 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -27.446 AMFE: -0.698 GC content %: 39.310 | |
| Atauschii_AET7Gv20467300.20 AET7Gv20467300.20 |
Low | No | 2132 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -27.505 AMFE: -0.681 GC content %: 40.385 | |
| Atauschii_AET7Gv20467300.21 AET7Gv20467300.21 |
Low | No | 1465 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -28.014 AMFE: -0.677 GC content %: 41.365 | |
| Atauschii_AET7Gv20467300.22 AET7Gv20467300.22 |
Low | No | 1875 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.045 Folding energies... MFEI: -27.339 AMFE: -0.672 GC content %: 40.693 | |
| Atauschii_AET7Gv20467300.23 AET7Gv20467300.23 |
Low | No | 2075 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -27.817 AMFE: -0.686 GC content %: 40.578 | |
| Atauschii_AET7Gv20467300.24 AET7Gv20467300.24 |
Low | No | 1918 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.048 Folding energies... MFEI: -27.456 AMFE: -0.678 GC content %: 40.511 | |
| Atauschii_AET7Gv20467300.25 AET7Gv20467300.25 |
Low | No | 1842 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.042 Folding energies... MFEI: -27.443 AMFE: -0.670 GC content %: 40.988 | |
| Atauschii_AET7Gv20467300.26 AET7Gv20467300.26 |
Low | No | 2161 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.068 Folding energies... MFEI: -27.274 AMFE: -0.674 GC content %: 40.444 | |
| Atauschii_AET7Gv20467300.28 AET7Gv20467300.28 |
Low | No | 1928 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.048 Folding energies... MFEI: -27.780 AMFE: -0.681 GC content %: 40.820 | |
| Atauschii_AET7Gv20467300.29 AET7Gv20467300.29 |
Low | No | 1700 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -27.376 AMFE: -0.670 GC content %: 40.882 | |
| Atauschii_AET7Gv20467300.31 AET7Gv20467300.31 |
Low | Yes | 2743 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -27.616 AMFE: -0.702 GC content %: 39.336 | |
| Atauschii_AET7Gv20467300.32 AET7Gv20467300.32 |
Low | Yes | 2824 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.109 Folding energies... MFEI: -27.422 AMFE: -0.700 GC content %: 39.164 | |
| Atauschii_AET7Gv20467300.33 AET7Gv20467300.33 |
Low | No | 1716 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.032 Folding energies... MFEI: -27.541 AMFE: -0.674 GC content %: 40.851 | |
| Atauschii_AET7Gv20467300.34 AET7Gv20467300.34 |
Low | No | 1450 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -28.379 AMFE: -0.686 GC content %: 41.379 | |
| Atauschii_AET7Gv20467300.35 AET7Gv20467300.35 |
Low | No | 1911 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.047 Folding energies... MFEI: -27.436 AMFE: -0.678 GC content %: 40.450 | |
| Atauschii_AET7Gv20467300.36 AET7Gv20467300.36 |
Low | No | 1556 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.018 Folding energies... MFEI: -26.922 AMFE: -0.672 GC content %: 40.039 | |
| Atauschii_AET7Gv20467300.37 AET7Gv20467300.37 |
Low | No | 708 | OG0000148 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -28.489 AMFE: -0.670 GC content %: 42.514 | |
| Atauschii_AET7Gv20467300.4 AET7Gv20467300.4 |
Low | No | 430 | OG0026173 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -23.326 AMFE: -0.608 GC content %: 38.372 | |
| Atauschii_AET7Gv20467300.51 AET7Gv20467300.51 |
Low | No | 906 | OG0080371 | Get ORF Coding potential... Type: noncoding Potential: -0.068 Folding energies... MFEI: -30.640 AMFE: -0.600 GC content %: 51.104 | |
| Atauschii_AET7Gv20467300.9 AET7Gv20467300.9 |
Low | No | 401 | OG0080372 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -23.940 AMFE: -0.575 GC content %: 41.646 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20467300.25 | SwissProt | 2021-04-01 | Q9ZNT1 | 5.09e-13 |
| Atauschii_AET7Gv20467300.32 | Rfam | 14.6 | MIR1122 | 8.1e-11 |
| Atauschii_AET7Gv20467300.20 | SwissProt | 2021-04-01 | Q9ZNT1 | 4.3e-7 |
| Atauschii_AET7Gv20467300.4 | SwissProt | 2021-04-01 | B1WC86 | 2.43e-4 |
| Atauschii_AET7Gv20467300.29 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20467300.33 | SwissProt | 2021-04-01 | Q9ZNT1 | 4.58e-13 |
| Atauschii_AET7Gv20467300.23 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20467300.26 | SwissProt | 2021-04-01 | Q9ZNT1 | 6.35e-13 |
| Atauschii_AET7Gv20467300.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET7Gv20467300.21 | SwissProt | 2021-04-01 | Q9ZNT1 | 2.55e-7 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
