Atauschii AET7Gv20470800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20470800 [ AET7Gv20470800] |
7D | 139484942 | 139491977 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20470800.10 AET7Gv20470800.10 |
Low | No | 1199 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -28.073 AMFE: -0.580 GC content %: 48.374 | |
| Atauschii_AET7Gv20470800.11 AET7Gv20470800.11 |
Low | No | 1230 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -27.748 AMFE: -0.564 GC content %: 49.187 | |
| Atauschii_AET7Gv20470800.12 AET7Gv20470800.12 |
High | No | 1099 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -24.713 AMFE: -0.577 GC content %: 42.857 | |
| Atauschii_AET7Gv20470800.13 AET7Gv20470800.13 |
Low | No | 1762 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -25.897 AMFE: -0.594 GC content %: 43.587 | |
| Atauschii_AET7Gv20470800.14 AET7Gv20470800.14 |
Low | No | 1284 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -26.908 AMFE: -0.578 GC content %: 46.573 | |
| Atauschii_AET7Gv20470800.15 AET7Gv20470800.15 |
Low | No | 1413 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -26.313 AMFE: -0.583 GC content %: 45.152 | |
| Atauschii_AET7Gv20470800.16 AET7Gv20470800.16 |
Low | No | 757 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -30.211 AMFE: -0.547 GC content %: 55.218 | |
| Atauschii_AET7Gv20470800.9 AET7Gv20470800.9 |
Low | No | 1395 | OG0001930 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -29.484 AMFE: -0.593 GC content %: 49.749 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET7Gv20470800.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET7Gv20470800.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET7Gv20470800.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET7Gv20470800.16 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET7Gv20470800.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET7Gv20470800.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA; LTR/Gypsy | |
| Atauschii_AET7Gv20470800.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
