Atauschii AET7Gv20490700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20490700 [ AET7Gv20490700] |
7D | 150450760 | 150454865 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20490700.1 AET7Gv20490700.1 |
High | No | 3565 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -26.572 AMFE: -0.627 GC content %: 42.384 | |
| Atauschii_AET7Gv20490700.10 AET7Gv20490700.10 |
High | No | 2549 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.350 Folding energies... MFEI: -26.936 AMFE: -0.637 GC content %: 42.291 | |
| Atauschii_AET7Gv20490700.11 AET7Gv20490700.11 |
High | No | 525 | OG0080410 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -22.495 AMFE: -0.591 GC content %: 38.095 | |
| Atauschii_AET7Gv20490700.2 AET7Gv20490700.2 |
High | No | 4000 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -26.122 AMFE: -0.628 GC content %: 41.625 | |
| Atauschii_AET7Gv20490700.3 AET7Gv20490700.3 |
High | No | 622 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -30.080 AMFE: -0.499 GC content %: 60.289 | |
| Atauschii_AET7Gv20490700.4 AET7Gv20490700.4 |
High | No | 3811 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -26.521 AMFE: -0.634 GC content %: 41.853 | |
| Atauschii_AET7Gv20490700.5 AET7Gv20490700.5 |
High | No | 3184 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.329 Folding energies... MFEI: -26.702 AMFE: -0.623 GC content %: 42.871 | |
| Atauschii_AET7Gv20490700.6 AET7Gv20490700.6 |
High | No | 853 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -28.089 AMFE: -0.532 GC content %: 52.755 | |
| Atauschii_AET7Gv20490700.7 AET7Gv20490700.7 |
High | No | 882 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -28.458 AMFE: -0.541 GC content %: 52.608 | |
| Atauschii_AET7Gv20490700.8 AET7Gv20490700.8 |
High | No | 2830 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -26.724 AMFE: -0.636 GC content %: 42.014 | |
| Atauschii_AET7Gv20490700.9 AET7Gv20490700.9 |
High | No | 2993 | OG0001931 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -26.241 AMFE: -0.635 GC content %: 41.296 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
