Atauschii AET7Gv20501100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20501100 [ AET7Gv20501100] |
7D | 156296950 | 156301109 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET7Gv20501100.1 AET7Gv20501100.1 |
High | No | 3111 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -26.241 AMFE: -0.650 GC content %: 40.373 | |
| Atauschii_AET7Gv20501100.10 AET7Gv20501100.10 |
High | No | 3018 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -26.643 AMFE: -0.640 GC content %: 41.650 | |
| Atauschii_AET7Gv20501100.11 AET7Gv20501100.11 |
High | No | 3190 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -26.379 AMFE: -0.642 GC content %: 41.097 | |
| Atauschii_AET7Gv20501100.12 AET7Gv20501100.12 |
High | No | 3089 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -26.575 AMFE: -0.640 GC content %: 41.534 | |
| Atauschii_AET7Gv20501100.13 AET7Gv20501100.13 |
High | No | 2921 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -26.570 AMFE: -0.649 GC content %: 40.911 | |
| Atauschii_AET7Gv20501100.14 AET7Gv20501100.14 |
High | No | 3056 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -26.296 AMFE: -0.642 GC content %: 40.936 | |
| Atauschii_AET7Gv20501100.15 AET7Gv20501100.15 |
High | No | 3376 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -25.843 AMFE: -0.642 GC content %: 40.284 | |
| Atauschii_AET7Gv20501100.16 AET7Gv20501100.16 |
High | No | 2308 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.345 Folding energies... MFEI: -26.564 AMFE: -0.631 GC content %: 42.114 | |
| Atauschii_AET7Gv20501100.17 AET7Gv20501100.17 |
High | No | 3047 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -23.784 AMFE: -0.631 GC content %: 37.709 | |
| Atauschii_AET7Gv20501100.18 AET7Gv20501100.18 |
High | No | 2423 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -24.845 AMFE: -0.634 GC content %: 39.208 | |
| Atauschii_AET7Gv20501100.19 AET7Gv20501100.19 |
High | No | 887 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -25.344 AMFE: -0.618 GC content %: 41.037 | |
| Atauschii_AET7Gv20501100.2 AET7Gv20501100.2 |
High | No | 3346 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -26.180 AMFE: -0.645 GC content %: 40.586 | |
| Atauschii_AET7Gv20501100.3 AET7Gv20501100.3 |
High | No | 3178 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -25.991 AMFE: -0.650 GC content %: 39.962 | |
| Atauschii_AET7Gv20501100.4 AET7Gv20501100.4 |
High | No | 3216 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -25.892 AMFE: -0.638 GC content %: 40.578 | |
| Atauschii_AET7Gv20501100.5 AET7Gv20501100.5 |
High | No | 3695 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -25.648 AMFE: -0.642 GC content %: 39.946 | |
| Atauschii_AET7Gv20501100.6 AET7Gv20501100.6 |
High | No | 3123 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -26.292 AMFE: -0.644 GC content %: 40.826 | |
| Atauschii_AET7Gv20501100.7 AET7Gv20501100.7 |
High | No | 3100 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -26.410 AMFE: -0.641 GC content %: 41.226 | |
| Atauschii_AET7Gv20501100.8 AET7Gv20501100.8 |
High | No | 3088 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -26.729 AMFE: -0.652 GC content %: 40.965 | |
| Atauschii_AET7Gv20501100.9 AET7Gv20501100.9 |
High | No | 2917 | OG0000569 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -26.952 AMFE: -0.649 GC content %: 41.550 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
